Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq195 141 1e-28 seq12400 104 3e-17 >seq195 Length=27450 Score = 141 bits (156), Expect = 1e-28 Identities = 404/616 (66%), Gaps = 4/616 (1%) Strand=Plus/Plus Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 || || ||||| | | | |||||| || ||||||||| ||| ||||| || |||||| Sbjct 4740 GTGTAAGGTTCAAAACACTCATTAAACCCAAGAATTTGACTAGTCGATGCCGTGGGCATA 4799 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATG-ATTTTATCTTTTAGATGTTT 68879 || || | ||| | | ||| |||| ||| ||||| | | ||| ||||| | | | Sbjct 4800 GGAGCAAGCAAAAGAGAATTCCTAATTCCA-GTGTTTTTCACTTTTTCTTTCAAACTATC 4858 Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939 ||| ||||| | || | |||| || ||||| | || |||| || || || | ||| Sbjct 4859 CCACTCCCACAATTCCGTTGGTTTCACGTTCCACATGTCAAATTGAAGGATGCCTTGACT 4918 Query 68940 TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC 68999 ||| ||| || | | || |||||||| || ||| ||| | ||| || Sbjct 4919 TGCGGGTGAGCCTGGAAAAGTCTCATAAGGGCCGTCCCTGAGAGCCAACTCATTGGAAGC 4978 Query 69000 CTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA-TCTTGTGCTTCTA 69058 ||||| || | | ||| | ||||| ||||||| ||||||| ||||| ||||| | Sbjct 4979 CTCTAGAGCTGCATGATATAAAGTTTCAAAAATCTGAATATTGAGTCTCTTG-GCTTCAA 5037 Query 69059 GACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATAC 69118 | ||| || ||| | |||| ||||||||| || | || ||||||||||| | Sbjct 5038 GCGAATCAAACGGAAGCTTCAAAATCTGAAATGCATCAGCTAGCCCTTGAACCCCAATGC 5097 Query 69119 CGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATAT 69178 | || || | |||||| | || || ||| || || || | || |||||||| |||| Sbjct 5098 CAATCGGGCGGTGTCTCATGTTCGATTTTTTTGCCTCCGGCACTGGGTAATAATTTATAT 5157 Query 69179 CTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT 69238 | || ||||| || | ||| || ||| | || || || | ||||| | || | Sbjct 5158 CAATGATTTTGTTCAAATTGTGGGTAACTTCCTTGGTAACATCATGGAGTTTTTGGAAGT 5217 Query 69239 CAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTA 69298 | | |||||| | | | | | || || | |||||| | ||||||||||| | Sbjct 5218 CGTAGTTTCCATCCACGATATATGTCGGTAGGGCAATAGATGCCAAGTTACAAACTGCCA 5277 Query 69299 CCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCC 69358 | |||| || | ||| | || || || || || ||||| |||||||||| | Sbjct 5278 CTTCATCAGGCGCAGAATACTCGATAATTTCCGTGCAAAGATTGGAGGATTTGATAGTTC 5337 Query 69359 CCAGATTTTGCTGATT 69374 | || |||| ||| || Sbjct 5338 CAAGGTTTTTCTGGTT 5353 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 69594 AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATT 69653 ||||||| ||||||| | ||| |||||||| || || |||||| || | | || ||| Sbjct 5718 AACTCGTGTCATAAACAAATCAGGAATCCAGAGCGCGTAAAAGAGGTCCCGAGCTCGATT 5777 Query 69654 TTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 |||||| ||||| ||||||| | || || | | || | ||||| | ||||||||| Sbjct 5778 TTCTTCCTTTCCGTGATTTTTTCTCAGGTCTAACCAGTCAAAGATATCTGCATGCCATGG 5837 Query 69714 TTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 ||| ||||| || || | | || |||| || || || |||||||| Sbjct 5838 TTCAAGATAGATAGCAAAAGCGCCGGGTCTCTTGTTGCCACCCTGATC 5885 >seq12400 Length=4870 Score = 104 bits (114), Expect = 3e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || ||||| ||||||||||| | |||||| | |||||| || ||| | ||||| || Sbjct 1972 ATTTGAAAGCCGTAAAAACAACGTGCTTCCGCAATTTGAACTTCTCCGCTGAATCTCTCA 2031 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | ||| ||||| || || ||||| || || || ||||| | ||||| ||||| Sbjct 2032 ATTAGATTCTCATTGACGATGCCATCTGAGGCAGCGAAGAATGCAAGAACATGCTTAATG 2091 Query 40058 AAATATTTTTCATCGGGTGTCAATTTATT---CCAGTCATTGATATCTTTTGATATATCT 40114 |||| ||| || || | | | ||| || ||| || | || ||||| |||| ||| Sbjct 2092 AAATGTTTCTCGTCCGCATTTAGTTTTTTGTCCCAATCGTGCATGTCTTTAGATAGATCA 2151 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | |||||| || ||||||||||| || || || |||||| Sbjct 2152 ATTTCTTCCGCCGTCCAAAACGAAGCTTCGGCGCGTTTGTA 2192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686395876612680