Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3790 232 5e-56 seq12400 98.7 8e-16 >seq3790 Length=10706 Score = 232 bits (256), Expect = 5e-56 Identities = 331/462 (72%), Gaps = 18/462 (4%) Strand=Plus/Plus Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTAC 19418 ||| ||||||||| ||||||||||||||| |||||| || || | ||| ||| | | Sbjct 8888 TGGTCCACCGGGTACTGGAAAAACATTAATGGCGAGACAAATTGGAAAAATGTTAAATGC 8947 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 || | |||| || || |||||||| |||||||| |||||||||| ||||| |||| Sbjct 8948 AAGAGAACCA---AAGATCGTAAATGGACCTGAAATTTTAAATAAATTCGTAGGAGAATC 9004 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 ||| ||||| | ||| || ||| | || || |||| |||| | ||| | | | || | Sbjct 9005 TGAAAAAAATATTCGAGAATTATTTTCAGAAGCAGAAGTAGAATATAAA-GCTAAAGGAG 9063 Query 19539 CAAAAGTTC---TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 || || ||| || ||||||||| | |||||||| || || || ||||| ||||| Sbjct 9064 ATGAA--TCAGGTTTACATATTATAATATTTGATGAATTAGATGCCATTTGTAAACAAAG 9121 Query 19596 AGGTTCT------GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 ||||||| |||| || |||||| ||| | || ||||||||| | | || || Sbjct 9122 AGGTTCTACTGGTGGTGGAACTGGAGTGGGTGATTCAGTGGTCAATCAATTATTATCTAA 9181 Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | | || || || | ||| | |||||||||||| ||||||| ||||||||| || | || Sbjct 9182 AATGGATGGAGTGGATCAATTAAATAATATTTTAATTATTGGAATGACTAATCGATTAGA 9241 Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769 | || || || ||| || |||| ||||| || ||| | | || ||||| || Sbjct 9242 TATGATTGATGAAGCTTTACTAAGACCAGGTCGATTAGAAGTTCATATGGAAATCTCATT 9301 Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 ||| |||||| || ||| | ||||||||||||| ||||| Sbjct 9302 ACCTGATGAAAAGGGTCGTTTACAAATTTTAAACATTCATAC 9343 >seq12400 Length=4870 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 44162 TTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 || |||| |||||| ||||| |||| || ||| | |||||||| |||||||||||||| Sbjct 1528 TTTTTTTTAGGATCATTTGCTTCCATTTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGA 1469 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||||||||||| |||||||| || || || ||||| | ||| |||||| || || Sbjct 1468 TTGACGTTTTCCAATGAGTTGATTTCCCGGGACGAAGGGCTTCATACCGATTTCGCATG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397166634270685