Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq195 141 1e-28 >seq195 Length=27450 Score = 141 bits (156), Expect = 1e-28 Identities = 397/597 (66%), Gaps = 18/597 (3%) Strand=Plus/Plus Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTTGGCA 110777 |||||| |||||||| || |||||| |||||||| |||| || || || || |||| Sbjct 4739 TGTGTAAGGTTCAAAACACTCATTAA-ACCCAAGAATTTGACTAGTCGATGCCGTGGGCA 4797 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 | || || | ||||||| || | || || | | || | ||| || | | || Sbjct 4798 TAGGAGCAAGCAAAAGAGAATTCCTAATTCCAGTGTTTTTCACTTTTTCTTTCAAACTAT 4857 Query 110838 CCCAGTCGTAG--TTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTG 110895 |||| || | || | |||||||||| |||| |||||||||| ||||| | ||||| Sbjct 4858 CCCACTCCCACAATTCCG-TTGGTTTCACGTTCC-ACATGTCAAATTGAAGGATGCCTTG 4915 Query 110896 GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 110955 ||||| || || ||| || ||||| | || | |||||| ||| | Sbjct 4916 ACTTGCGGGTGAGCCTGGAAAAGTCTCATAAGGGCCGTCCCTGAGAGCCAACTCATTGGA 4975 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-TCTCCTTGGCTT 111014 ||||| || | ||| ||||| | |||||||| || || ||| | ||| |||||||| Sbjct 4976 AGCCTCTAGAGCTGCATGATATAAAGTTTCAAAAATCTGAATATTGAGTCT-CTTGGCTT 5034 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAAT-AAATACATCCGCGAGACCTTGAACACCC 111073 || |||||||| | | ||| || || | |||| |||| || || |||||||| || Sbjct 5035 CAAGCGAATCAAACG-GAAGCTTCAAAATCTGAAATGCATCAGCTAGCCCTTGAACCCCA 5093 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | ||||| || | ||||| ||| || || ||| || | || || ||| ||||| Sbjct 5094 ATGCCAATCGGGCGGTGTCTCATGTTCGATTTTTTTGCCTCCGGCACTGGGTAATAATTT 5153 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 | ||||||| | ||| | ||| | |||||| ||| || | ||||| ||||||| Sbjct 5154 ATATCAATGATTTTGTTCAAATTGTGGGTAACTTCCTTGGTAACATCATGGAGTTTTT-- 5211 Query 111194 TAATCAAAAGTGCGAGTCT-CTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 |||| ||| | | || || ||| | || ||||| || |||||||| || Sbjct 5212 -----GGAAGTCGTAGTTTCCATCCACGATATATGTCGGTAGGGCAATAGATGCCAAGTT 5266 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309 ||||| ||| ||||| | | ||||| | |||||| || || | ||||| Sbjct 5267 ACAAACTGCCACTTCATCAGGCGCAGAATACTCGATAATTTCCGTGCAAAGATTGGA 5323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627563040655200