Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq195 113 6e-20 >seq195 Length=27450 Score = 113 bits (124), Expect = 6e-20 Identities = 294/443 (66%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| ||||| || ||||| ||||| || || || || ||| |||||||| || Sbjct 4889 CCACATGTCAAATTGAAGGATGCCTTGACTTGCGGGTGAGCCTGGAAAAGTCTCATAAGG 4948 Query 118403 GCCCTCAACCTCCG--CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCA 118460 ||| || ||| | |||| || | ||||| || ||||| ||||| | |||||| Sbjct 4949 GCCGTC--CCTGAGAGCCAACTCATTGGAAGCCTCTAGAGCTGCATGATATAAAGTTTCA 5006 Query 118461 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT- 118519 ||||| || ||| | | |||||| || |||||||||| || | || || | Sbjct 5007 AAAATCTGAATATTGAGTCTCTTGGCTTCAAGCGAATCAAACG-GAAGCTTCAAAATCTG 5065 Query 118520 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 118579 |||| |||| || || ||||| || || | |||||| ||||| |||||||| || || || Sbjct 5066 AAATGCATCAGCTAGCCCTTGAACCCCAATGCCAATCGGGCGGTGTCTCATGTTCGATTT 5125 Query 118580 CCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || | ||| || ||| |||| |||| || | | || | ||| | ||| || Sbjct 5126 TTTTGCCTCCGGCACTGGGTAATAATTTATATCAATGATTTTGTTCAAATTGTGGGTAAC 5185 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699 |||| || | ||||| || |||| | | || | | | | || || ||| Sbjct 5186 TTCCTTGGTAACATCATGGAGTTTTTGGAAGTCGTAGTTTC------CATCCACGATATA 5239 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 | || ||||| || || |||| ||||| || | ||||| ||| ||||| Sbjct 5240 TGTCGGTAGGGCAATAGATGCCAAGTTACAAACTGCCACTTCATCAGGCGCAGAATACTC 5299 Query 118760 TATAATTTCCGTGCACAAGTTTG 118782 |||||||||||||| ||| ||| Sbjct 5300 GATAATTTCCGTGCA-AAGATTG 5321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617973406705720