Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq55921 104 1e-17 seq8307 102 4e-17 >seq55921 Length=1058 Score = 104 bits (114), Expect = 1e-17 Identities = 218/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 64965 TGAG-ACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAA 65023 |||| ||||||||| || ||||| || | || |||||| |||||| || Sbjct 297 TGAGTACCATCATCCTCTAAATAATTAAGGATATGATCATCTGGGGGTGGAAAGATGACT 356 Query 65024 CGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCA--- 65080 | || ||||| | ||| | |||| ||||||| ||||| | || |||| ||| Sbjct 357 CAGGTAATTTTCTCCAAGTTAGTAAAAATATACCTTTCCAAGGCTGCATCTTTACCACCC 416 Query 65081 GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATA 65140 | || || ||||| || ||||| || | | ||| ||||| || || | | Sbjct 417 GAAGCACGAGTACCAAATTGCCCATTGGGGGACAGAATATTGATATTATTACTTCCGACA 476 Query 65141 AAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCT 65200 ||||| ||||||| || | ||||| | |||| || |||||||||||||| || || Sbjct 477 AAATTTTGAGCCAAGCCAACAATTGTTTGCGTTAAGCTGGCTTCACCGTGATGGTAAGCT 536 Query 65201 GAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTT 65260 || |||||||| |||||||| ||||| || ||||| ||||||| | || || || Sbjct 537 GAGTGTTCAGAACAATATCCACCTAATTGTGCCACTTTGATTTCCGCCTTCAATTTTCTT 596 Query 65261 TTAAATGCAGAATACAATATTTT 65283 || || |||| |||| | ||| Sbjct 597 TTGAAACAAGAAAACAAAACTTT 619 >seq8307 Length=6684 Score = 102 bits (112), Expect = 4e-17 Identities = 208/306 (68%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 64965 TGAG-ACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAA 65023 |||| ||||||||| || ||||| || | || |||||| |||||| || Sbjct 5408 TGAGTACCATCATCCTCTAAATAATTAAGGATATGATCATCTGGGGGTGGAAAGATGACT 5349 Query 65024 CGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCA--- 65080 | || ||||| | ||| | |||| ||||||| ||||| | || |||| ||| Sbjct 5348 CAGGTAATTTTCTCCAAGTTAGTAAAAATATACCTTTCCAAGGCTGCATCTTTACCACCC 5289 Query 65081 GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATA 65140 | || || ||||| | ||||| || | | ||| ||||| || || | | Sbjct 5288 GAAGCACGAGTACCAAATTTCCCATTGGGGGACAGAATATTGATATTATTACTTCCGACA 5229 Query 65141 AAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCT 65200 ||||| ||||||| || | ||||| | |||| || |||||||||||||| || || Sbjct 5228 AAATTTTGAGCCAAGCCAACAATTGTTTGCGTTAAGCTGGCTTCACCGTGATGGTAAGCT 5169 Query 65201 GAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAA-ATTCTT 65259 || |||||||| |||||||| ||||| || ||||| ||||||| |||| ||||| Sbjct 5168 GAGTGTTCAGAACAATATCCACCTAATTGTGCCACTTTGATTTCCGCCTTTAATTTTCTT 5109 Query 65260 TTTAAA 65265 || ||| Sbjct 5108 TTGAAA 5103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235508414428050