Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7505 181 1e-40 seq195 145 9e-30 seq16992 86.0 7e-12 >seq7505 Length=7180 Score = 181 bits (200), Expect = 1e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || ||||| || |||||| || | ||||| || ||||||| Sbjct 3700 ACTGGGAAGACAATCACCCTTGAAGTCGAGTCATCAGACACCATTGATAACGTGAAGGCC 3641 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || || ||||| |||||||| || | || |||||||||||| Sbjct 3640 AAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAGCAACGCTTGATCTTTGCTGGTAAG 3581 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| |||||||| |||||||| || |||||||||| || ||| | || Sbjct 3580 CAACTTGAGGATGGACGTACCCTTGCAGACTACAACATCCAAAAGGAGTCTACTTTGCAC 3521 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||||||||||||||| Sbjct 3520 CTCGTCTTGCGTCTTCGCGGTGG 3498 Score = 165 bits (182), Expect = 9e-36 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||| | |||| ||||| || || |||||| | || || || || ||| | || Sbjct 1984 TTTCTCAACA-GCTTGACCGGTAAAACCATTACTTTGGAAGTGGAATCGTCTGACACAAT 1926 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| |||||||||||||||||||||| ||||| || || || || ||||||||||| Sbjct 1925 TGACAATGTGAAGGCTAAAATTCAGGACAAAGAGGGCATCCCGCCTGATCAGCAGCGTCT 1866 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 ||||| |||||||| ||||| ||||||| || || | ||||| ||||| | ||||| Sbjct 1865 CATTTTCGCTGGTAAACAACTTGAGGATGGCCGAACATTGGCAGATTATAACATTCAAAA 1806 Query 27594 GGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || |||||||||||||| | ||||| || || ||| Sbjct 1805 AGAGTCAACTCTTCATCTAGTTCTCCGTCTCCGTGGAGGA 1766 Score = 159 bits (176), Expect = 4e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 27426 GCTTA-CCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 ||||| |||||||||||||||| || |||||||| || |||| |||| ||| | | Sbjct 3131 GCTTAACCGGCAAGACTATTACACTCGAGGTTGAATCCTCCGATACGATTGATAATGTCA 3072 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || || || |||||||| || ||||| ||||| |||||||| | || ||||||| Sbjct 3071 AGGCAAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAGCAGCGATTGATCTTTGCTG 3012 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 |||| ||||| || |||| ||||||||||| || || || | ||||||||||| ||| Sbjct 3011 GTAAACAACTAGAAGATGGCCGTACCCTAGCTGATTACAACATTCAAAAGGAATCTACTT 2952 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || | ||||| || || || Sbjct 2951 TGCATCTCGTGCTCCGTCTACGTGGAGG 2924 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || |||||||| || || ||| | |||| ||| | || Sbjct 2556 CTGACTGGGAAGACAATAACGCTTGAGGTCGAATCGTCTGACACAATTGATAATGTAAAA 2497 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||| |||||||| || ||||| || ||||| || || |||| ||||| ||| Sbjct 2496 GCCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAACGATTAATCTTTGCCGGT 2437 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||||||| || || | ||| ||||| ||||| || || |||| ||||||||||| | Sbjct 2436 AAGCAACTTGAAGACGGTCGCACCCTCGCAGATTACAACATCCAGAAGGAATCCACCTTG 2377 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||||||||||| ||||| || Sbjct 2376 CATCTCGTCTTGCGTCTGCGCGGAGG 2351 Score = 141 bits (156), Expect = 1e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 27426 GCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 |||| || || |||||||| ||| | ||||||||||| || | ||| | ||| | | Sbjct 3417 GCTTGACTGGAAAGACTATCACTTTGGAGGTTGAGTCTTCCGACACCATCGACAATGTCA 3358 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 ||||||| || || ||||| || || |||||||| |||||||| || |||||||| |||| Sbjct 3357 AGGCTAAGATCCAAGACAAAGAAGGCATTCCTCCGGACCAGCAACGGCTAATTTTCGCTG 3298 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | |||||||||||||||| || ||| |||| || || || | || |||||||| || Sbjct 3297 GAAAGCAACTCGAGGATGGCCGCACCTTAGCGGATTACAACATTCAGAAGGAATCGACCT 3238 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || | || | || ||||| Sbjct 3237 TGCATCTGGTACTACGCTTGCGAGGTGG 3210 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| |||||||| || ||||| |||||||| || | ||| | || | || || Sbjct 2265 ACCGGGAAGACTATCACCCTTGAAGTTGAGTCCTCCGACACCATCGATAACGTTAAAGCC 2206 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||| ||||| |||||||| || || || || || |||||||| ||||| Sbjct 2205 AAGATTCAAGACAAAGAGGGCATTCCTCCGGATCAACAACGGCTCATTTTTGCGGGTAAA 2146 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | || |||| ||| || || || || ||||| | || || ||||| ||||||||| Sbjct 2145 CAGTTGGAAGATGGTCGAACTCTTGCTGATTATAACATTCAGAAAGAATCTACTCTTCAT 2086 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||| | | ||||| || ||| Sbjct 2085 CTCGTCCTCAGACTTCGTGGAGGA 2062 >seq195 Length=27450 Score = 145 bits (160), Expect = 9e-30 Identities = 207/290 (71%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCC 80784 ||||| || || ||||| || ||| | ||||||||||| | | |||||||| | ||| Sbjct 5073 TCAGCTAGCCCTTGAACCCCAATGCCAATCGGGCGGTGTCTCATGTTCGATTTTTTTGCC 5132 Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844 ||||| | ||||||| | || |||| |||| ||||| ||| | ||||| || Sbjct 5133 TCCGGCACTGGGTAATAATTTATATCAATGATTTTGTTCAAATTGTGGGTAACTTCCTTG 5192 Query 80845 GTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCAC---AAATGCCGGAAGG 80901 ||||||||||| ||||| || |||||| | ||| || | ||| | ||| ||| ||| Sbjct 5193 GTAACATCATGGAGTTTTTGGAAGTCG---TAGTTTCCATCCACGATATATGTCGGTAGG 5249 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCC 80961 | || |||| || || || ||||| || |||| | | | |||||| |||||| Sbjct 5250 GCAATAGATGCCAAGTTACAAACTGCCACTTCATCAGGCGCAGAATACTCGATAATTTCC 5309 Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||||| | ||| || || || || || || |||||||||||||| || || Sbjct 5310 GTGCAAAGATTGGAGGATTTGATAGTTCCAAGGTTTTTCTGGTTCGATTT 5359 >seq16992 Length=3647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 27413 TCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCA 27472 ||||| || | | || || || |||||||| || ||||| || || ||| ||| | | Sbjct 2123 TCTTTATCCACAGCCTCACGGGTAAGACTATCACCCTTGACGTCGAAGCAGCTGACACAA 2182 Query 27473 TTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTC 27532 | | ||| | ||||| ||||||||||||||||| || || || ||||||||||| || Sbjct 2183 TCGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATCCCGCCAGACCAGCAACGAT 2242 Query 27533 TAATTTTTGC 27542 | |||| ||| Sbjct 2243 TGATTTGTGC 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569884542095440