Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7505 111 1e-19 >seq7505 Length=7180 Score = 111 bits (122), Expect = 1e-19 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| ||||| ||| ||||||||||||||||||| | |||||| Sbjct 1776 AGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCCAATGTTCGG 1835 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||||||||| || || || | |||||| || || ||||| | ||||| Sbjct 1836 CCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGGATGCCCTCT 1895 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| ||| ||| | || || | ||||||||| || | |||||||||| | Sbjct 1896 TTGTC-CTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGAT-TCCACTTCCAAAG 1953 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAA 34698 | || ||||||||||| || | || | |||| Sbjct 1954 TAATGGTTTTACCGGTCAAGCTGTTGAGAAAA 1985 Score = 104 bits (114), Expect = 1e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||| | ||| ||||| || ||||| ||||||| || || || Sbjct 2360 AGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCTGCGAGGGTGCGA 2419 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| ||||||||||| ||||| || |||||||| || || | || ||| Sbjct 2420 CCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGTGGAATACCTTCC 2479 Query 34609 TTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTC 34646 |||||| ||||| ||||| | || ||||||||| Sbjct 2480 TTGTCTTGAATCTTGGCTTTTACATTAT-CAATTGTGTC 2517 Score = 91.5 bits (100), Expect = 9e-14 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| || || |||||||||||||| | ||| ||||| | ||||| | || Sbjct 2086 ATGAAGAGTAGATTCTTTCTGAATGTTATAATCAGCAAGAGTTCGACCATCTTCCAACTG 2145 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||| ||||| || | || ||||| ||||| || | ||||| |||||| ||| | Sbjct 2146 TTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGAATGCCCTCTTTGTCT-TGAATCT 2204 Query 34623 TTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||||||| || || ||||| | ||| ||||| | ||| || || || |||| Sbjct 2205 TGGCTTTAACGTTATCGATGGTGTCGGAGGACTCAACTTCAAGGGTGATAGTCTTCCCGG 2264 Query 34682 TTAA 34685 | || Sbjct 2265 TCAA 2268 Score = 91.5 bits (100), Expect = 9e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||| | ||| |||||||||||||| ||||| | || || || Sbjct 2933 AGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGCTAGGGTACGG 2992 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| ||||| || || ||||| || || || || | || ||| Sbjct 2993 CCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCC 3052 Query 34609 TTGTCTGTGATCTTT 34623 |||||| ||||||| Sbjct 3053 TTGTCTTGGATCTTT 3067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314500462786721