Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7505 136 3e-27 >seq7505 Length=7180 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 |||||| || ||| | || || ||||| || ||| |||| ||| | ||||| | || || Sbjct 2557 TCTGACTGGGAAGACAATAACGCTTGAGGTCGAATCGTCTGACACAATTGATAATGTAAA 2498 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 | || ||||||||||| ||||| || ||||| || ||||| || ||||| | ||||| Sbjct 2497 AGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAACGATTAATCTTTGCCGG 2438 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 || ||| | |||||| || ||| | | ||||||||||| || ||||| || ||||| Sbjct 2437 TAAGCAACTTGAAGACGGTCGCACCCTCGCAGATTACAACATCCAGAAGGAATCCACCTT 2378 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || |||||| |||| || || || Sbjct 2377 GCATCTCGTCTTGCGTCTGCGCGGAGGTAT 2348 Score = 129 bits (142), Expect = 5e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| ||||||| || || || ||| | ||||| ||||||| | ||||| | Sbjct 3126 ACCGGCAAGACTATTACACTCGAGGTTGAATCCTCCGATACGATTGATAATGTCAAGGCA 3067 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| ||||| || ||||| ||||| ||||| || || | || || ||| Sbjct 3066 AAGATCCAAGACAAGGAAGGTATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGTAAA 3007 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | ||||| | ||| | | |||||||||||||||||||| || || || ||| Sbjct 3006 CAACTAGAAGATGGCCGTACCCTAGCTGATTACAACATTCAAAAGGAATCTACTTTGCAT 2947 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| | || || ||||| Sbjct 2946 CTCGTGCTCCGTCTACGTGGAGGCAT 2921 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||| || | |||||| | ||||||||| |||| ||| | ||||| | || || Sbjct 1971 TGACCGGTAAAACCATTACTTTGGAAGTGGAATCGTCTGACACAATTGACAATGTGAAGG 1912 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 |||||||| |||||||| ||||| || || ||||| |||||| | || | ||| || | Sbjct 1911 CTAAAATTCAGGACAAAGAGGGCATCCCGCCTGATCAGCAGCGTCTCATTTTCGCTGGTA 1852 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTA 27188 ||||| | || || | ||| | || | ||||| ||||||||||| ||||| || | Sbjct 1851 AACAACTTGAGGATGGC-CGAACATTGGCAGATTATAACATTCAAAAAGAGTCAACTCTT 1793 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| | ||| | ||| | || || || Sbjct 1792 CATCTAGTTCTCCGTCTCCGTGGAGG 1767 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || ||| |||| ||| | || || || | |||||| | || || | ||||| Sbjct 3414 TGACTGGAAAGACTATCACTTTGGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGG 3355 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || ||||||||||||||||| || || || || || || |||| | ||| || | Sbjct 3354 CTAAGATCCAAGACAAAGAAGGCATTCCTCCGGACCAGCAACGGCTAATTTTCGCTGGAA 3295 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | || || | ||| | | |||||||||||||| ||||| |||||||| | Sbjct 3294 AGCAACTCGAGGATGGCCGCACCTTAGCGGATTACAACATTCAGAAGGAATCGACCTTGC 3235 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||| | || ||||| ||||| || Sbjct 3234 ATCTGGTACTACGCTTGCGAGGTGGTAT 3207 Score = 104 bits (114), Expect = 2e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||| ||| |||| || |||||||| || | |||||| | || || | || ||| Sbjct 2267 TGACCGGGAAGACTATCACCCTTGAAGTTGAGTCCTCCGACACCATCGATAACGTTAAAG 2208 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || |||||||||||||| ||||| || || |||||||| || | || | || || | Sbjct 2207 CCAAGATTCAAGACAAAGAGGGCATTCCTCCGGATCAACAACGGCTCATTTTTGCGGGTA 2148 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 |||| |||||||| || || || | ||||| |||||||| || || || || Sbjct 2147 AACAGTTGGAAGATGGTCGAACTCTTGCTGATTATAACATTCAGAAAGAATCTAC 2093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | || || |||||||| || | || ||| | ||||| | || || Sbjct 3700 ACTGGGAAGACAATCACCCTTGAAGTCGAGTCATCAGACACCATTGATAACGTGAAGGCC 3641 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||||||||| ||||| || || || || || || || || || | || || || Sbjct 3640 AAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAGCAACGCTTGATCTTTGCTGGTAAG 3581 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | || || | ||| || | || |||||||| ||||||||||| || || || Sbjct 3580 CAACTTGAGGATGGACGTACCCTTGCAGACTACAACATCCAAAAGGAGTCTACTTTGCAC 3521 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || |||||| | || ||||| || Sbjct 3520 CTCGTCTTGCGTCTTCGCGGTGGTAT 3495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434593640994240