Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7505 102 6e-17 >seq7505 Length=7180 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || || || || || || || || || || | ||||| |||| | ||||| Sbjct 2556 CTGACTGGGAAGACAATAACGCTTGAGGTCGAATCGTCTGACACAATTGATAATGTAAAA 2497 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 || ||| ||||| |||||| | || || || ||||| || ||||| |||||||| Sbjct 2496 GCCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAACGATTAATCTTTGCCGGT 2437 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 || ||||| ||||||| ||||| | | ||||||||||| || || || ||||| || Sbjct 2436 AAGCAACTTGAAGACGGTCGCACCCTCGCAGATTACAACATCCAGAAGGAATCCACCTTG 2377 Query 23812 CATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| | || || | |||| ||||| Sbjct 2376 CATCTCGTCTTGCGTCTGCGCGGAGG 2351 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || ||||| || ||| | ||||| || || | ||||| |||| ||| | || | Sbjct 1969 ACCGGTAAAACCATTACTTTGGAAGTGGAATCGTCTGACACAATTGACAATGTGAAGGCT 1910 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 |||| || |||||||| || | ||||| ||||| |||||| | || || || || || Sbjct 1909 AAAA-TTCAGGACAAAGAGGGCATCCCGCCTGATCAGCAGCGTCTCATTTTCGCTGGTAA 1851 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| || || | || || || | ||||| ||||| ||||||||||| || | || Sbjct 1850 ACAACTTGAGGATGGCCGAACATTGGCAGATTATAACATTCAAAAAGAGTCAACTCTTCA 1791 Query 23814 TTTAGTTTTAAGGTTGCGAGGAGGAT 23839 | ||||| | | | || ||||||| Sbjct 1790 TCTAGTTCTCCGTCTCCGTGGAGGAT 1765 Score = 98.7 bits (108), Expect = 7e-16 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || || || || || ||||| ||||| ||| | || || |||| ||| | || || Sbjct 3126 ACCGGCAAGACTATTACACTCGAGGTTGAATCCTCCGATACGATTGATAATGTCAAGGCA 3067 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || | | ||||| |||||| | || |||||||| ||||| || || ||||| || || Sbjct 3066 AAGA-TCCAAGACAAGGAAGGTATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGTAA 3008 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| ||||| | || || ||| ||||||||||| ||||| || || || || || Sbjct 3007 ACAACTAGAAGATGGCCGTACCCTAGCTGATTACAACATTCAAAAGGAATCTACTTTGCA 2948 Query 23814 T 23814 | Sbjct 2947 T 2947 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || ||||| || |||||| | || ||||| || | ||||| | || ||| | || | Sbjct 3412 ACTGGAAAGACTATCACTTTGGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGGCT 3353 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || | | ||||||||||| | || || || || || || |||| || || || || Sbjct 3352 AAGA-TCCAAGACAAAGAAGGCATTCCTCCGGACCAGCAACGGCTAATTTTCGCTGGAAA 3294 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 ||||| || || | ||||| |||| ||||||||||| || || || || || || || Sbjct 3293 GCAACTCGAGGATGGCCGCACCTTAGCGGATTACAACATTCAGAAGGAATCGACCTTGCA 3234 Query 23814 TTTAGTTTTAAGGTTGCGAGGAGG 23837 | | || || | |||||||| || Sbjct 3233 TCTGGTACTACGCTTGCGAGGTGG 3210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337763513906396