Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7505 138 3e-27 >seq7505 Length=7180 Score = 138 bits (152), Expect = 3e-27 Identities = 154/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| ||||| || || ||||| |||||||| || | || ||||| || | ||| Sbjct 2068 ACGAAGTCTGAGGACGAGATGAAGAGTAGATTCTTTCTGAATGTTATAATCAGCAAGAGT 2127 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||| || || || || || || |||||||| || || ||||| || Sbjct 2128 TCGACCATCTTCCAACTGTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGAATGCC 2187 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || |||||||| ||||| |||| | | | ||||||||||| |||| || || || | Sbjct 2188 CTCTTTGTCTTGAATCTTG-GCTTTAACGTTATCGATGGTGTCGGAGGACTCAACTTCAA 2246 Query 225671 ACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| || |||||| Sbjct 2247 GGGTGATAGTCTTCCCGGTCAAA 2269 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| || ||||| |||| ||| || || || | ||| | |||||| Sbjct 2654 AGTACAAGATGCAGAGTAGACTCTTTCTGGATATTATAGTCAGCGAGAGTACGCCCATCC 2713 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| |||||||| || | |||||||| || || || || |||||||| ||| Sbjct 2714 TCAAGTTGCTTGCCAGCGAAAATCAACCGTTGTTGATCTGGTGGGATGCCTTCCTTATCT 2773 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| |||| ||| || || || || || ||| Sbjct 2774 TGAATCTTGGCCTTTACGTTATCGATGGTGTCGGAGGATTCTACCTCCAAAGTAATGGTC 2833 Query 225682 TTGCCCGTCAA 225692 || || ||||| Sbjct 2834 TTTCCAGTCAA 2844 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || | ||| ||||| ||||| | |||||||| || | || | |||||| Sbjct 2939 AGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGCTAGGGTACGGCCATCT 2998 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| || || ||||| ||||| | ||| || || || || |||||||||||||||||| Sbjct 2999 TCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCT 3058 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || || || || |||| ||| || || | || || ||| Sbjct 3059 TGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAACCTCGAGTGTAATAGTC 3118 Query 225682 TTGCCCGTCAA 225692 ||||| || || Sbjct 3119 TTGCCGGTTAA 3129 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || || | |||||||| || || || | ||||| || || ||||| ||| Sbjct 3240 GTCGATTCCTTCTGAATGTTGTAATCCGCTAAGGTGCGGCCATCCTCGAGTTGCTTTCCA 3299 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || || ||||| ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 3300 GCGAAAATTAGCCGTTGCTGGTCCGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCCTTG 3359 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 ||| ||||||||||| || | || || || || ||||| ||||| || ||||| Sbjct 3360 ACATTGTCGATGGTGTCGGAAGACTCAACCTCCAAAGTGATAGTCTTTCCAGTCAA 3415 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||| ||||| | ||| || || ||||||| ||||| || || | || Sbjct 3504 CGAAGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTA 3563 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || ||||| ||||| ||||| | ||||| ||||| || || |||||| Sbjct 3564 CGTCCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGGATACCT 3623 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| |||||| || ||||||||||| | || || || | Sbjct 3624 TCCTTGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCGACTTCAAGG 3683 Query 225673 GTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| || || ||| Sbjct 3684 GTGATTGTCTTCCCAGTTAAA 3704 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || || | |||||||| || |||| |||||||| || | || Sbjct 2357 CGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCTGCGAGGGTG 2416 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| || || ||||| | |||||||||||| || ||||||||| Sbjct 2417 CGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGTGGAATACCT 2476 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| || ||| || || ||||| || | ||| || || | | Sbjct 2477 TCCTTGTCTTGAATCTTGGCTTTTACATTATCAATTGTGTCAGACGATTCGACCTCAAGC 2536 Query 225673 GTGATCGTCTTGCCCGTCA 225691 || || ||||| || |||| Sbjct 2537 GTTATTGTCTTCCCAGTCA 2555 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 225581 AGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAG 225640 |||||||||| |||||||| || |||||||| || |||||||||||||| || ||| Sbjct 3948 AGATAAGTCGCTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACAT 4007 Query 225641 CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| ||||| || | ||| || ||||| ||||| || ||||| || Sbjct 4008 TATCGATCGTGTCCGAAGATTCAACTTCTAAGGTGATAGTTTTGCCGGT 4056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191618460097478