Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12400 100 4e-16 seq195 93.3 6e-14 >seq12400 Length=4870 Score = 100 bits (110), Expect = 4e-16 Identities = 152/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC--CTCCGTACAAAATCGTT 48519 || ||||| ||||||||||| | ||||| | || || || ||||| | |||| | Sbjct 1972 ATTTGAAAGCCGTAAAAACAACGTGCTTCCGCAATTTGAACTTCTCCG--CTGAATCTCT 2029 Query 48520 CAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAA 48579 || | ||||||||| || || ||||| ||||| || ||||| | ||||| |||| Sbjct 2030 CAATTAGATTCTCATTGACGATGCCATCTGAGGCAGCGAAGAATGCAAGAACATGCTTAA 2089 Query 48580 TAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATAT 48636 | |||| ||| |||| | | | ||||| || ||| || | || ||||| |||| || Sbjct 2090 TGAAATGTTTCTCGTCCGCATTTAGTTTTTTGTCCCAATCGTGCATGTCTTTAGATAGAT 2149 Query 48637 CTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 | | |||||| || |||||||| || || || || Sbjct 2150 CAATTTCTTCCGCCGTCCAAAACGAAGCTTCGGC 2183 >seq195 Length=27450 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||||| ||||||| | |||||| ||||| || || ||| || || || | || || Sbjct 5718 AACTCGTGTCATAAACAAATCAGGAATCCAGAGCGCGTAAAAGAGGTCCCGAGCTCGATT 5777 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 |||||| ||||| ||| ||| | || || | | || | ||||| | ||||||||| Sbjct 5778 TTCTTCCTTTCCGTGATTTTTTCTCAGGTCTAACCAGTCAAAGATATCTGCATGCCATGG 5837 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATA 78175 ||| ||||| || || | | | || |||| || || || |||||||| | ||| Sbjct 5838 TTCAAGATAGATAGCAAAAGCGCCGGGTCTCTTGTTGCCACCCTGATCAACATA 5891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694150082123680