Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq195 147 3e-30 seq12400 105 1e-17 >seq195 Length=27450 Score = 147 bits (162), Expect = 3e-30 Identities = 408/619 (66%), Gaps = 10/619 (2%) Strand=Plus/Plus Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 || || ||||| | | | ||||| || | ||||||| ||| || || || |||||| Sbjct 4740 GTGTAAGGTTCAAAACACTCATTAAACCCAAGAATTTGACTAGTCGATGCCGTGGGCATA 4799 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG-ATTTTATCTTTTAGATATTT 75882 || || | ||| | | ||| || | ||| ||||| | | ||| ||||| | | | Sbjct 4800 GGAGCAAGCAAAAGAGAATTCCTAATTCCA-GTGTTTTTCACTTTTTCTTTCAAACTATC 4858 Query 75883 CCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 ||| ||||| | || | |||| || | ||| | || |||| || || || | || Sbjct 4859 CCACTCCCACAATTCCGTTGGTTTCACGTTCCACATGTCAAATTGAAGGATGCCTTGACT 4918 Query 75943 AGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC---GCAACT 75999 || ||| || | | || || |||| |||||| | ||| | || | || Sbjct 4919 TGCGGGTGAGCCTGGAAAAGTCTCATAAGGGCCGTCCCTGAGAGCCAACTCATTGGAA-- 4976 Query 76000 CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA-TCTTGCGCTT 76058 ||||||| || | | ||| | ||||| ||||||| |||| || ||||| |||| Sbjct 4977 -GCCTCTAGAGCTGCATGATATAAAGTTTCAAAAATCTGAATATTGAGTCTCTTG-GCTT 5034 Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAA 76118 |||| |||||| ||| | |||| ||||||||| ||||| || ||||| |||| Sbjct 5035 CAAGCGAATCAAACGGAAGCTTCAAAATCTGAAATGCATCAGCTAGCCCTTGAACCCCAA 5094 Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 | ||||| || | |||||| | || || ||| || || || | ||||||||||| | Sbjct 5095 TGCCAATCGGGCGGTGTCTCATGTTCGATTTTTTTGCCTCCGGCACTGGGTAATAATTTA 5154 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 |||| || ||||| || | ||| | |||| | || || || | ||||| | | Sbjct 5155 TATCAATGATTTTGTTCAAATTGTGGGTAACTTCCTTGGTAACATCATGGAGTTTTTGGA 5214 Query 76239 AATCAAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGG 76298 | || | |||||||| | | | | | || || |||||||| | |||||||| | Sbjct 5215 AGTCGTAGTTTCCATCCACGATATATGTCGGTAGGGCAATAGATGCCAAGTTACAAACTG 5274 Query 76299 CTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAG 76358 | || |||| || | ||| | || || |||||||| ||||| | ||||||| Sbjct 5275 CCACTTCATCAGGCGCAGAATACTCGATAATTTCCGTGCAAAGATTGGAGGATTTGATAG 5334 Query 76359 TTCCAAGATTTTGTTGGTT 76377 ||||||| |||| ||||| Sbjct 5335 TTCCAAGGTTTTTCTGGTT 5353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 ||| ||| ||||||| | |||||| ||||| || || ||| || || || | || | Sbjct 5718 AACTCGTGTCATAAACAAATCAGGAATCCAGAGCGCGTAAAAGAGGTCCCGAGCTCGATT 5777 Query 76657 TTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGG 76716 |||||| ||||| ||| ||| | || |||| | || | ||||| | ||||||||| Sbjct 5778 TTCTTCCTTTCCGTGATTTTTTCTCAGGTCTAACCAGTCAAAGATATCTGCATGCCATGG 5837 Query 76717 TTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGC 76776 ||| ||||| || || | | | || |||| || || || |||||||| | ||| | || Sbjct 5838 TTCAAGATAGATAGCAAAAGCGCCGGGTCTCTTGTTGCCACCCTGATCAACATACCGCGC 5897 Query 76777 AGT 76779 ||| Sbjct 5898 AGT 5900 >seq12400 Length=4870 Score = 105 bits (116), Expect = 1e-17 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || ||||| ||||||||||| | |||||| | ||| || || ||| | |||| ||| Sbjct 1972 ATTTGAAAGCCGTAAAAACAACGTGCTTCCGCAATTTGAACTTCTCCGCTGAATCTCTCA 2031 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 | ||||||||| || || ||||| ||||| || ||||| | ||||| ||||| Sbjct 2032 ATTAGATTCTCATTGACGATGCCATCTGAGGCAGCGAAGAATGCAAGAACATGCTTAATG 2091 Query 47071 AAATATTTTTCATCGGTAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCT 47127 |||| ||| || || | | | ||||| || ||| || | || ||||| |||| ||| Sbjct 2092 AAATGTTTCTCGTCCGCATTTAGTTTTTTGTCCCAATCGTGCATGTCTTTAGATAGATCA 2151 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 | |||||| || ||||| || || || || || Sbjct 2152 ATTTCTTCCGCCGTCCAAAACGAAGCTTCGGC 2183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712402042971840