Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7505 111 4e-19 >seq7505 Length=7180 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| |||||||||||||| ||||| || ||||| ||||| || | ||||| Sbjct 2072 AGTCTGAGGACGAGATGAAGAGTAGATTCTTTCTGAATGTTATAATCAGCAAGAGTTCGA 2131 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | ||| || || || || |||| || || |||| | || || || Sbjct 2132 CCATCTTCCAACTGTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGAATGCCCTCT 2191 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || ||| || | || | | |||| || ||| |||||||| || Sbjct 2192 TTGTCTTGAATCTTGGCTTTAACGTTATCGATGGTGTCGGAGGACTCAACTTCAAGGGTG 2251 Query 152067 ATAGTTTTGCCCGT 152080 ||||| || || || Sbjct 2252 ATAGTCTTCCCGGT 2265 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||||||||| ||||||||||| ||||| ||||| || || |||| Sbjct 1775 GAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCCAATGTTCG 1834 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || ||||| || || | |||||| || | || ||| || || Sbjct 1835 GCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGGATGCCCTC 1894 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || |||||||| || ||| | || | |||| || || ||||| | ||| Sbjct 1895 TTTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCACTTCCAAAGT 1954 Query 152066 AATAGTTTTGCCCGT 152080 ||| ||||| || || Sbjct 1955 AATGGTTTTACCGGT 1969 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| | |||||| || ||||| ||||||||||| |||| || | ||||| Sbjct 2938 GAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGCTAGGGTACGGCCATC 2997 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 |||||| ||| || || ||||| | | |||||| || | | || |||||||| || Sbjct 2998 TTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTC 3057 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || ||| |||||| | || | | || || || || || || |||||||| Sbjct 3058 TTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAACCTCGAGTGTAATAGT 3117 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 3118 CTTGCCGGT 3126 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || || | ||||||||| |||||||||||||| || || | || | ||||| || Sbjct 3515 GACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGTCCATCCTC 3574 Query 151955 TAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || || || || ||||| |||| | |||||||| | | ||| |||||||| |||| Sbjct 3575 AAGTTGCTTACCAGCAAAGATCAAGCGT-TGCTGGTCAGGAGGGATACCTTCCTTGTCTT 3633 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 |||| || || || | || | | ||||||| ||| |||||||| || || || | Sbjct 3634 GAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCGACTTCAAGGGTGATTGTCT 3693 Query 152074 TGCCCGT 152080 | || || Sbjct 3694 TCCCAGT 3700 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||| |||||||||||||| ||||| || || || || | ||| | |||||| Sbjct 2653 GAGTACAAGATGCAGAGTAGACTCTTTCTGGATATTATAGTCAGCGAGAGTACGCCCATC 2712 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || | || || || || | | ||| |||||||| || Sbjct 2713 CTCAAGTTGCTTGCCAGCGAAAATCAACCGTTGTTGATCTGGTGGGATGCCTTCCTTATC 2772 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || || || | || | | |||| || ||||| || | |||||| || Sbjct 2773 TTGAATCTTGGCCTTTACGTTATCGATGGTGTCGGAGGATTCTACCTCCAAAGTAATGGT 2832 Query 152072 TTTGCCCGT 152080 || || || Sbjct 2833 CTTTCCAGT 2841 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | || || || || || ||||||||||| ||||| || | ||||| Sbjct 3225 AGTACCAGATGCAAGGTCGATTCCTTCTGAATGTTGTAATCCGCTAAGGTGCGGCCATCC 3284 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || |||| |||||||||| | || ||||| || | Sbjct 3285 TCGAGTTGCTTT--CCAGCGAAAATTAGCCGTTGCTGGTCCGGAGGAATGCCTTCTTTGT 3342 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || |||||| | || | | |||| ||| ||| || || | ||| |||| Sbjct 3343 CTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCCAAAGTGATAG 3402 Query 152071 TTTTGCCCGT 152080 | || || || Sbjct 3403 TCTTTCCAGT 3412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152937688275527