Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7505 152 1e-31 seq16992 89.7 1e-12 >seq7505 Length=7180 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| || || || ||| ||||||||||| ||||| ||| Sbjct 2265 ACCGGGAAGACTATCACCCTTGAAGTTGAGTCCTCCGACACCATCGATAACGTTAAAGCC 2206 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| |||||||| || || |||||||| || ||||| || || || || || ||| Sbjct 2205 AAGATTCAAGACAAAGAGGGCATTCCTCCGGATCAACAACGGCTCATTTTTGCGGGTAAA 2146 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | |||||||| | |||||||| ||||||||| | || |||||||| || || ||| Sbjct 2145 CAGTTGGAAGATGGTCGAACTCTTGCTGATTATAACATTCAGAAAGAATCTACTCTTCAT 2086 Query 178125 CTTGTTTTGAGACT 178138 || || | ||||| Sbjct 2085 CTCGTCCTCAGACT 2072 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| | ||||| || || ||||||||||| || ||||| Sbjct 3412 ACTGGAAAGACTATCACTTTGGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGGCT 3353 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||||||||| || ||||||||||||||||| || || ||||| ||||| Sbjct 3352 AAGATCCAAGACAAAGAAGGCATTCCTCCGGACCAGCAACGGCTAATTTTCGCTGGAAAG 3293 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| | || | || ||||| ||| | || || ||||| || ||||| Sbjct 3292 CAACTCGAGGATGGCCGCACCTTAGCGGATTACAACATTCAGAAGGAATCGACCTTGCAT 3233 Query 178125 CTTGT 178129 || || Sbjct 3232 CTGGT 3228 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| || || || ||||||||||| || ||||| || Sbjct 3700 ACTGGGAAGACAATCACCCTTGAAGTCGAGTCATCAGACACCATTGATAACGTGAAGGCC 3641 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||| |||||||| ||||||||||| | ||||| || || || Sbjct 3640 AAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAGCAACGCTTGATCTTTGCTGGTAAG 3581 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || |||||| | || ||||| || || ||| ||||||| || || || |||| Sbjct 3580 CAACTTGAGGATGGACGTACCCTTGCAGACTACAACATCCAAAAGGAGTCTACTTTGCAC 3521 Query 178125 CTTGTTTTG 178133 || || ||| Sbjct 3520 CTCGTCTTG 3512 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || || || | ||||| ||| ||| ||||||||||| ||||| || Sbjct 2841 ACTGGAAAGACCATTACTTTGGAGGTAGAATCCTCCGACACCATCGATAACGTAAAGGCC 2782 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| || || ||||| ||||| || || || ||||| | || ||||| || || Sbjct 2781 AAGATTCAAGATAAGGAAGGCATCCCACCAGATCAACAACGGTTGATTTTCGCTGGCAAG 2722 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | ||||| || || ||||| |||| ||||| || || |||||| Sbjct 2721 CAACTTGAGGATGGGCGTACTCTCGCTGACTATAATATCCAGAAAGAGTCTACTCTGCAT 2662 Query 178125 CTTGT 178129 ||||| Sbjct 2661 CTTGT 2657 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| || || | || |||||| || ||||| || || || || || Sbjct 1969 ACCGGTAAAACCATTACTTTGGAAGTGGAATCGTCTGACACAATTGACAATGTGAAGGCT 1910 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || |||||||||||||| || ||||| || || ||||| || || || ||||| || ||| Sbjct 1909 AAAATTCAGGACAAAGAGGGCATCCCGCCTGATCAGCAGCGTCTCATTTTCGCTGGTAAA 1850 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | || | || ||||||||| | |||||||| ||||| || ||| Sbjct 1849 CAACTTGAGGATGGCCGAACATTGGCAGATTATAACATTCAAAAAGAGTCAACTCTTCAT 1790 Query 178125 CTTGTT 178130 || ||| Sbjct 1789 CTAGTT 1784 >seq16992 Length=3647 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAA--AGCTCAGACACCATCGAGAACGTCA 177999 ||||| || || || |||||||| || || ||| |||| ||||| ||||| || |||| Sbjct 2137 CTCACGGGTAAGACTATCACCCTTGACGTCGAAGCAGCT--GACACAATCGACAATGTCA 2194 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 | ||| ||||||||||| ||||| ||||| || |||||||||||| Sbjct 2195 AGGCAAAAATTCAGGACAAGGAAGGCATCCCGCCAGACCAGCAACGA 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202809887837978