Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=2105630 Score = 143 bits (158), Expect = 3e-29 Identities = 461/714 (65%), Gaps = 46/714 (6%) Strand=Plus/Minus Query 145589 CAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGG 145648 |||||||||| | |||||||||| || || | | | | || ||||| ||| Sbjct 326027 CAAAGTCCTCGTACTTGAAGTCATCGATATCGGTGATATGGCGCTTTATGTTGAGCTTGG 325968 Query 145649 GAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 | |||||| || || | || ||||||| ||| || ||||| ||||| | |||| Sbjct 325967 GGAAGGGCAATGGT-TCACGCTCGAGCTGGATCTTGAGTGGCTCTACGTGATCTTTGTAG 325909 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||| ||||| |||| | | || ||| ||||||| | |||| | ||| Sbjct 325908 ACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATCAGTGACTTTAGCG 325849 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | ||| ||||| |||| | ||||||||| ||||||||||| || |||| ||| | || Sbjct 325848 ATCATATAGGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCCCAACCCGAGATCG 325789 Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCT--------CCCCGCCC------------- 145866 | || || ||||||| || || ||||||| |||| || Sbjct 325788 CAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCAACCCTTTGCGTAAGCG 325729 Query 145867 ---------GCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGC 145917 | ||| |||||||||| | | |||||| || || || |||||| | Sbjct 325728 TCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAGAGCCATGAGAGCA 325669 Query 145918 AGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGGTTCCTCTTG 145974 || || |||||||| || |||| | || |||||| || |||||| ||||| Sbjct 325668 AGATCTTTGGGGTTCCATGCACTGAGCAAGA---TCCTGCGATCGGTGGGGTTGTTCTTG 325612 Query 145975 ATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAG 146034 |||| | || | || | | ||||| ||||| || || ||| || || | | || Sbjct 325611 ATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAGTCGGTGTCGCAG 325552 Query 146035 TCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCG 146094 ||| ||| | || || ||||| | ||| ||||| |||||||| || |||| || || Sbjct 325551 TCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGGACCCAAATCACC- 325493 Query 146095 GGCTC-CCTGTGCCCCAGCCCGGCCCG---GGCGAGGAAGTCCCGGGACCCGTTGGCGTC 146150 ||| || ||| || | | || | ||||||| || || || ||||| |||| Sbjct 325492 TTCTCGCCGGTG---TTGCAAGTCACGTGAGTCGAGGAACTCTCGCGATCCGTTACCGTC 325436 Query 146151 CCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCA 146210 |||||| | |||||| | | | || |||||||| || || | ||||| Sbjct 325435 CCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGCCACAAACCA 325376 Query 146211 GAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 ||| ||||| || || || || | | ||||||| | ||| ||||| ||||| || Sbjct 325375 GAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCAGAGG 325322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076622976960