Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq11 113 3e-20 seq5 89.7 3e-13 >seq11 Length=671998 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || |||| | || || | ||||||||| ||||| Sbjct 438679 TCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAG 438738 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || ||| | || |||||||| ||||| ||| | || | Sbjct 438739 ATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTG 438798 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||||| || | |||||||| ||||||||||| || || ||| Sbjct 438799 TCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 438858 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 438859 AAGATCTGCATC 438870 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || ||||| || ||||| |||||||||||||| || ||| | || Sbjct 438430 AGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 438489 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||| |||||||| || ||| | | ||||||||| Sbjct 438490 TCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 438549 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | |||||||| Sbjct 438550 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 438609 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | ||| || || ||||||||||| Sbjct 438610 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 438641 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| | || || | || Sbjct 360140 AGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCT 360081 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || ||||| |||||||| || ||| | | |||||||| Sbjct 360080 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 360021 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | ||||| || Sbjct 360020 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTC 359961 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| ||||| ||||||||||||||| Sbjct 359960 TTACCCGTGAGGGTTTTAACAAAGATCTGCATC 359928 >seq5 Length=755036 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || || || || || ||||| |||||||||||||| || ||| |||| Sbjct 175633 AGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 175692 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || || || || | ||||||||||| || | | |||||||| Sbjct 175693 TCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 175752 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || ||||| || | ||||| || Sbjct 175753 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTC 175812 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || || ||||||||||| Sbjct 175813 TTACCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071905501440