Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13 163 6e-35 >seq13 Length=613501 Score = 163 bits (180), Expect = 6e-35 Identities = 413/626 (66%), Gaps = 9/626 (1%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | |||||| || || ||| ||| || | ||| || | |||||| Sbjct 64755 TACAACTTCTTCGGTTTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAG 64814 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || ||||||||| | ||||| || |||||||| |||||| | ||| Sbjct 64815 GTCGCTGAGCGTCCCCAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGAC 64874 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||||| | | |||||||||| | ||| || | | || |||||| | Sbjct 64875 ATTGAGAGTGCTATTGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCATGCCTCG 64934 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || ||||||||||||||||||||| | || |||||| ||||| || ||| | || Sbjct 64935 CCAACGCTCTTCAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACC 64994 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATT 249114 ||| | || ||||| ||||||| || || ||||| || | |||| || | ||| Sbjct 64995 ATGAAGGATGACTCGATCGACGGGATCTACGACACCCTCA---AGACCTGTGCCATGATC 65051 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || ||| || || ||||||||| | || | ||| || | | || || ||| Sbjct 65052 TCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATTCGTGGTACCGGCTCTTAC 65111 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 || ||||| || || ||||| | |||||||| ||| | || || ||| | | Sbjct 65112 ATTGCCGGTACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAAC 65171 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 || || | | | || |||| | || | || || | || || || || | Sbjct 65172 ACTGCTCGTTACGTCGACCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATT 65231 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||| | ||| | || |||||||| |||||| |||||| |||| || ||| Sbjct 65232 GAGCCTTGGCACTCGGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAG 65291 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 | | || ||||| |||||||||| || |||||| |||| | |||||| | Sbjct 65292 GAAGTTCGTGCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGG 65351 Query 249412 GTCAAGGCCGACGGCGATTGGACGCT 249437 ||| || | ||||||||| |||| Sbjct 65352 GTCGAGCAGAATGGCGATTGGTCGCT 65377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766069816832