Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 304 1e-77 seq23 199 4e-46 seq11 98.7 9e-16 >seq13 Length=613501 Score = 304 bits (336), Expect = 1e-77 Identities = 652/964 (68%), Gaps = 14/964 (1%) Strand=Plus/Minus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || |||||| ||||| | ||||| || || ||||| || || | |||||| | || Sbjct 65681 GAGGGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGAT 65622 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 |||||| || || ||| ||||| || || || | || |||||||| || || || Sbjct 65621 TTCGGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTT 65562 Query 23137 -GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 ||| | ||||||||||| ||| | || | || |||||| ||| ||||||| ||| | Sbjct 65561 AGCA-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG 65503 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTT 23255 | ||| | |||| || | || |||| | | || || ||||||| | Sbjct 65502 CGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCT 65443 Query 23256 GGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA 23314 ||| | |||| ||||| ||| ||||||| |||||||| |||||||| | | | || Sbjct 65442 CGTAGAGACGC-TCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGG 65384 Query 23315 CACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372 |||||||| ||| || | | || | || || | |||| || ||||| || | || Sbjct 65383 CACATGAGCGACCA-ATCGCCATTC-TGCTCGACCCTCTTCATGAAGAGATCGGGGACCC 65326 Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432 | ||||||||||| || || ||||| || || ||||| || ||| |||||| ||| | Sbjct 65325 AAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGT 65266 Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492 | | || || || || |||| ||||| ||||| | ||| | ||||| || || || | Sbjct 65265 CGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGAC 65206 Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552 ||| || || || || ||||||||||| || ||||||||| | || | ||||| |||| Sbjct 65205 GCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCA 65146 Query 23553 CGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612 ||| ||||||| | ||| || || | || || | | |||| | || Sbjct 65145 CGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGT 65086 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 | | || || ||| || || ||| | | || || ||||| || || || || |||| Sbjct 65085 GGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGT 65026 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 ||||||| || ||||| ||| || || | | ||| | ||||||||| || | || | Sbjct 65025 CGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAG 64966 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 | ||| ||| |||| ||| || || || ||| || |||||||| | ||||| Sbjct 64965 GGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACA 64906 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 | || |||||||| || || || |||||||||| ||||| ||||||| ||||| | Sbjct 64905 TGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACAC 64846 Query 23853 GCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATG 23909 |||| ||||||| || || | || ||||| | |||||| || || || || | Sbjct 64845 GCATGATCATGTGCTGGGGACGCTCAGCGACCTT---GCCGTTGATACGGAGCAAGTAGG 64789 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 | || | | || || || || || ||| |||| ||||| || |||| | |||| Sbjct 64788 ATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGG 64729 Query 23970 CCGA 23973 |||| Sbjct 64728 CCGA 64725 >seq23 Length=283388 Score = 199 bits (220), Expect = 4e-46 Identities = 488/734 (66%), Gaps = 27/734 (4%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| ||| ||| | ||||| Sbjct 279011 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 279070 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | ||||| || ||| | | || || Sbjct 279071 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 279130 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| || || ||||| || |||||||| | ||||| | Sbjct 279131 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 279190 Query 57747 TT---TTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 || ||| || || || | | || || ||||||| ||||| || || | Sbjct 279191 TTCAGTTCC---GAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATG 279247 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || |||| || ||||| |||||||| || ||| | | | Sbjct 279248 ATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACAT------CCGC 279301 Query 57864 GA---CGAGAAACGT-AGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 || |||| | || || || || |||| |||| || || |||| || ||| Sbjct 279302 GAGCCCGAGCAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAG 279361 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| || ||| | | |||||| || | || |||||| ||||| ||| | || Sbjct 279362 AAGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTC 279421 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || || ||||||||||||||||| ||||| || ||| |||||| | || || ||| Sbjct 279422 GTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGG 279481 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| ||||| || |||||||| || || || ||||||| | || || || ||| Sbjct 279482 CTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGAC 279541 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CG 58154 |||||||| || || |||||||| ||||| | | | ||| |||| || | || Sbjct 279542 GAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTTCAGCCAC---CTCAAGAAGCGCGCG 279598 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | || | || | | || || |||||||||||| ||||| | ||||| | Sbjct 279599 CACCCCGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTTCTTG 279658 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||| || | | || || ||| |||| |||||| | ||||||| ||||||| Sbjct 279659 ACCCAATCAATTCCTTGTGCGATGATCGGCATGAACCAAACGTTGATGTGTCAGTACATA 279718 Query 58275 GAGTTTGTTGCCGA 58288 ||||| ||||| Sbjct 279719 ACCTTTGTGGCCGA 279732 >seq11 Length=671998 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| |||| || || || || Sbjct 438869 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 438810 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || || ||| Sbjct 438809 GACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 438750 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || || || | ||||| ||| Sbjct 438749 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAAC 438690 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || |||||||| || || Sbjct 438689 ATTCAGAAGGAGTCCACCCTTCATCTCGTTCT 438658 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || ||||| | || || || | || Sbjct 438641 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 438582 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || || || ||| Sbjct 438581 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 438522 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | ||||| || | ||| || ||| Sbjct 438521 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 438462 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||| | ||||| || || Sbjct 438461 ATCCAGAAGGAGTCGACTTTGCATCTTGTCCT 438430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766266270080