Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq23 109 1e-18 seq13 86.0 1e-11 >seq23 Length=283388 Score = 109 bits (120), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAG----CAATAAC 101899 |||||| | |||||||||||| | ||||| || ||||| ||| | ||| | Sbjct 279345 TCCCCGTCGTCAAGAAGAAGGCCGAATGGGCCCTTCGATGGAT-CAACGACCGCAAGGCC 279403 Query 101900 GATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || || | | ||||||||||| || || ||||| |||||||| || | Sbjct 279404 ACCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCC 279463 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 || || || || |||||| ||||||| | ||| | |||| |||||||||| |||||| Sbjct 279464 TTTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAAC 279523 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| |||| ||| | ||||| |||||||| ||| ||||| ||| | || || Sbjct 279524 GAGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTT 279576 >seq13 Length=613501 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || || || ||||||||||| || || ||| || || || || || || Sbjct 65074 CCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCG 65015 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGT 94904 || || ||||| | | | | |||||| ||||| || || || ||||| | || Sbjct 65014 TCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTG-GGGGGT 64956 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || || || || || || || ||||| ||||| || | ||||||||| | || Sbjct 64955 ACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTA 64896 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 || ||||| || | ||||| |||||||| |||||||| |||||||| ||||| Sbjct 64895 CGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCAT 64836 Query 95025 GTCCTGAGGGCGCTCA 95040 || ||| || |||||| Sbjct 64835 GTGCTGGGGACGCTCA 64820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583695702920