Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 143 3e-29 seq23 113 6e-20 >seq13 Length=613501 Score = 143 bits (158), Expect = 3e-29 Identities = 440/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| || || | | || || | ||||| |||||||| || | | Sbjct 65386 GGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACC 65327 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 |||||||| || || || | | | | |||||| || || ||||| | Sbjct 65326 CAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAG 65267 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||| || ||||| || || | ||| || || | | ||||| Sbjct 65266 TCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGA 65207 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || || || || | ||| | ||| ||||| || | || | | ||| || Sbjct 65206 CGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGC 65147 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||| |||||||||| || || || | ||||||| | Sbjct 65146 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-A 65088 Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | || | ||||| || || || || | || ||||| | || || || | || Sbjct 65087 GTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 65028 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| ||||| || || || ||||| ||||| | | || ||||| || | || Sbjct 65027 GTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTG 64968 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | | | || || || || || | || || || || || ||||| | |||| || Sbjct 64967 AGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGA 64908 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | || ||||||||||||||||| || || ||| ||||| || || ||||| Sbjct 64907 CATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGAC 64848 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||||||||| || | ||| | | ||| ||| || | ||||||||| Sbjct 64847 ACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGA 64788 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | || | || || ||||| || ||||||| ||||| || ||||| || || | Sbjct 64787 TCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGC 64728 Query 63893 CGAATTGAGCTTATCCTT 63910 ||| | ||||| ||||| Sbjct 64727 CGAGTCGAGCTGGTCCTT 64710 >seq23 Length=283388 Score = 113 bits (124), Expect = 6e-20 Identities = 173/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||| ||| ||||||||||| | | || | ||||| || || ||||| Sbjct 279567 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 279508 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || || || || || || || || |||||| Sbjct 279507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 279448 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33758 || ||||| || || |||||||||| || | ||| | | ||| || ||| | Sbjct 279447 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 279388 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 279387 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 279328 Query 33819 AAGAGA 33824 |||||| Sbjct 279327 AAGAGA 279322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817411054720