Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq13 152 7e-32 seq23 140 5e-28 >seq13 Length=613501 Score = 152 bits (168), Expect = 7e-32 Identities = 782/1234 (63%), Gaps = 16/1234 (1%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||| || |||| || || || || ||||||| | | | || | || ||||| Sbjct 65677 GCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCG 65618 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||||||||| ||||| ||||| || | || | || || ||| |||| Sbjct 65617 GTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA 65558 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 || ||||| || || ||||| ||| |||| || || ||||||| || | || || | | Sbjct 65557 GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTAC 65498 Query 79795 CAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 79853 |||| | || | ||||| | | ||| | | || ||||| | || Sbjct 65497 CAGA-GCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTA 65439 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | || || |||||||| || | ||| | | || || || |||| ||| ||||| Sbjct 65438 GAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACAT 65379 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 | |||||| || |||| | || || | ||||| |||||||| || | ||||||||| Sbjct 65378 GAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGC 65319 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 || || || | || | | ||||| || || ||||| | |||||||| Sbjct 65318 GTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAA 65259 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | | ||| || ||||| || || | ||| || || | | || || || ||||| Sbjct 65258 CTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTT 65199 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || || || || | ||| | ||| ||||| || | || | | ||| || | ||||| Sbjct 65198 ACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACC 65139 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| |||| || || || | ||||||| | | || Sbjct 65138 GTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-AGTGGATGT 65080 Query 80214 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 | ||||| || || || || | || ||||| | || || || | || || |||| Sbjct 65079 TGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGA 65020 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | || || || ||||| ||||| | | || ||||| || | || | | Sbjct 65019 TCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGG 64960 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || || || || | || || || || || ||||| | |||| |||| || | Sbjct 64959 GGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGT 64900 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||||||||||||||| || || ||| ||||| || || ||||||||||| | Sbjct 64899 TGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGA 64840 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||| || | ||| ||| |||| || || | |||||| ||| || | Sbjct 64839 TCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCTCGA 64780 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 || || ||||| || ||||||| ||||| || ||||| || || |||||| || Sbjct 64779 GGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGA 64720 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632 | | ||||| | | |||| || | |||| | || || || ||| ||| Sbjct 64719 GCTGGTCCTTGTGCTGCATAACGACCTTGTAGGTGGCATCAGAGATCATGGGACTGTGTC 64660 Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 | | ||| ||||| || || || | | | | |||| | || | || | |||| || Sbjct 64659 TGCGATTCTTAGGGTTGACGTACTCGTAAAGGTCCTGTACGACCTGGCTGA--AGTTCTT 64602 Query 80693 --ttGTTTCCTTGTGTAGATTTGAT-ACGGCTATTCTGGCGGCTAAAATGGCATAATCTG 80749 | || |||||||| | | ||| | | ||| || | ||| || | | ||| || || | Sbjct 64601 GCTGGTCTCCTTGTGCA-AGTTGCTGATGGCAATGCGGGCAGCAAGGACGGCGTAGTCGG 64543 Query 80750 GAT--GTTG-TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 80806 | | |||| ||| | ||| ||| | ||||||| || || |||| | ||||| | Sbjct 64542 GGTGCGTTGTTGTCTTGTAAGCGGCGG---TTTCGGCAGCGAGGTTGTCGAGCTCTACGG 64486 Query 80807 TTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 | || || || | || || || | ||| ||||| Sbjct 64485 TGGTAACGCCCTCGTAGATACCGTCGATGACCTT 64452 >seq23 Length=283388 Score = 140 bits (154), Expect = 5e-28 Identities = 179/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || |||||| ||| ||||||||||| | | || || |||||||| || ||||| Sbjct 279567 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 279508 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 279507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 279448 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGT 50136 || ||||| || |||||||||||||| || | ||| | | |||| || ||| | Sbjct 279447 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 279388 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 279387 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 279328 Query 50197 AAGAGA 50202 |||||| Sbjct 279327 AAGAGA 279322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268584519360