Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 129 8e-25 seq23 118 1e-21 >seq13 Length=613501 Score = 129 bits (142), Expect = 8e-25 Identities = 446/694 (64%), Gaps = 4/694 (1%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || |||| | | || | ||||| Sbjct 65401 CCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATG 65342 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || | ||||||||| || || || | || | | ||||| || || Sbjct 65341 AAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCG 65282 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | ||||||||| | | | ||| || ||||| || || | ||| || Sbjct 65281 TGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATA 65222 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || || || || | ||| | ||| ||||| || | Sbjct 65221 GCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAG 65162 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | ||||| ||| |||| ||||| |||| || || || Sbjct 65161 ACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCG 65102 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 | ||||||| | || |||| |||| || || || || | || ||||| | | Sbjct 65101 GTACCACGAATGCAGTGGATGTTGA--GACCGATACCACCGGCGGTCTTGGAGATCATGG 65044 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | || || ||||| || || || |||||| ||||| | | || | Sbjct 65043 CACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGA 64984 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 |||| || | || | | || || || || || | || || || || || | Sbjct 64983 AACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAG 64924 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 |||| | |||| |||| || ||||||||||||||||| || || ||| | Sbjct 64923 TAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGT 64864 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 | || || || ||||||||||| | ||| ||||| || | ||| ||| |||| || | Sbjct 64863 GAATACCGACAGCGACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGA 64804 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 | | |||||||||| || | || || ||||| || ||||||| ||||| | Sbjct 64803 TACGGAGCAAGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGC 64744 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 | ||||| || || |||| | ||| | ||||| Sbjct 64743 GCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 64710 >seq23 Length=283388 Score = 118 bits (130), Expect = 1e-21 Identities = 273/411 (66%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || |||||| ||| |||||||| || | | || | |||||||| || ||||| Sbjct 279567 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 279508 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 279507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 279448 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG---TCATGT 42241 || ||||| || || |||||||||| || | ||| | | ||| || || | Sbjct 279447 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 279388 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 279387 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGCGTCA 279328 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 |||||| | | | | || | || || ||||| | || || || Sbjct 279327 AAGAGAAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 279268 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||| |||| || Sbjct 279267 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTCGGCGGCC 279208 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || || || | || || || || | | || ||||| || || |||||| Sbjct 279207 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCA 279157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138998658240