Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 219 6e-52 seq13 131 2e-25 >seq23 Length=283388 Score = 219 bits (242), Expect = 6e-52 Identities = 393/563 (70%), Gaps = 16/563 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| || |||| || Sbjct 279011 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 279070 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| |||| ||||| | | | | || ||| ||||| | || || || Sbjct 279071 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAAC-GAGCGTCACTTCATCTC 279129 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | |||||||| |||| || || || ||||||||||| || || || || | Sbjct 279130 TCACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAG-C 279188 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG--TGCTTTTACGGATTCCAAATCAT 125254 | ||| | ||| | ||| || | | | ||||| ||||| ||||| ||||| Sbjct 279189 GCTTCAGTTCCGAGGT--CCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCAT 279246 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| |||| ||||| || || |||| ||||| ||||| || Sbjct 279247 GATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCC 279306 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAA 125370 ||| || | | |||||| |||| |||| || | || ||| | | || | Sbjct 279307 CGAGCAGCGCGAGT---TTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAG-AAGA 279362 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| |||||| |||| |||||| | ||| |||| | | | ||| || | || | Sbjct 279363 AGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCG 279422 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| || || |||||||| || || ||||| | ||||| |||| Sbjct 279423 TTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGC 279482 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| ||||||||||| || || | |||||| | || ||||| |||| Sbjct 279483 TCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACG 279542 Query 125551 AGGGCCTACACTGTGACTTTGCC 125573 |||| || ||| || |||||| Sbjct 279543 AGGGTCTTCACACCGATTTTGCC 279565 >seq13 Length=613501 Score = 131 bits (144), Expect = 2e-25 Identities = 301/448 (67%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || || || || | || ||||| | || ||||||||| |||| Sbjct 65190 CAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGAT 65249 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| ||||||| ||| || || || | || ||| | || Sbjct 65250 GTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGAG 65309 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||||| || ||| | ||||||||| | ||| | | |||| | Sbjct 65310 CTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGAT 65369 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || |||||||| || || ||||| || |||| |||| || || |||||| Sbjct 65370 TGGTCGCTCATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTGCTACGGTGACGAGTTT 65429 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA---GTCGATGCA 97172 ||| ||| | ||||||| ||||| || | || || ||| ||| | || Sbjct 65430 GAGCGTCTCTACGAGCGCTACGAGGCTGAGGGACGCT--GTAAG-CGAACCGTCAAGGCC 65486 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| || ||| | |||||| | | ||||| ||||| || | ||| | ||| || Sbjct 65487 C-AGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCCT 65545 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| | | || ||||| |||||| || | || ||||||||| |||| Sbjct 65546 CTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCTC 65605 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| || ||||| ||||| | |||||| Sbjct 65606 CAACCTCTGCACCGAAATCATCGAGTAC 65633 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||||||||||||||||| || ||| | | ||||| ||||| ||||| ||| Sbjct 66367 TCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGCCGATCGAG 66426 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| | |||| |||| || ||| ||||| | || | ||| || || | | ||| Sbjct 66427 GTGCTTTCATTTGCCAGTCGCAGTCGCTCAATATCCACCTGTCCGCTCCTACGTTCGGTC 66486 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | || ||||| ||||| |||| ||||| ||||| ||||||||||| | ||||| | Sbjct 66487 AGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGTACCTACTACC 66546 Query 98218 TGAGAACAAAGTCGGCCACCAATGC 98242 | | || ||| | || |||| || Sbjct 66547 TCCGTACCAAGCCAGCATCCAACGC 66571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058977682240