Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq5 89.7 4e-13 >seq11 Length=671998 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| |||||||||||||| | | || | ||||| ||||| Sbjct 438666 ATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTG 438725 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| || | | |||||||||| || || Sbjct 438726 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 438785 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | || ||| ||||| || ||||| || ||||| Sbjct 438786 AGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 438845 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || ||||| ||||||||| Sbjct 438846 GAGGGTCTTGACAAAGATCTGCATC 438870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || || | || || ||||| Sbjct 360131 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAA-AAGGGTGCGACCATCTTCGAGCTG 360073 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | |||||||||||| || | | |||||||||| || || Sbjct 360072 CTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 360013 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | |||||| ||||| || || || ||||| Sbjct 360012 GGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCC 359955 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 ||||| ||||| ||||| ||||||||| || || Sbjct 359954 GTGAGGGTTTTAACAAAGATCTGCATCTTGACT 359922 >seq5 Length=755036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48530 GTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACC 48588 ||||||||||| ||||||||||| || | | | || || ||||||| || |||||||| Sbjct 175648 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTG-CGGCCGTCCTCGAGTTGCTTACC 175706 Query 48589 GCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT 48648 | | || || |||||||| || || | || |||||||||| || || ||| Sbjct 175707 AGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTT 175766 Query 48649 GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGT 48708 || | | ||||| || | ||||| |||| || || || |||||||| ||||| Sbjct 175767 GACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGT 175826 Query 48709 TTTCACAAAAATCTGCAT 48726 || || || |||||||| Sbjct 175827 CTTGACGAAGATCTGCAT 175844 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| ||||| | || || | || | ||||||||||| ||||||||||| || | Sbjct 174933 ACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 174992 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || ||||||| || |||||||| | | || || |||||||| || | Sbjct 174993 AAGAGTG-CGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAG 175051 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||||| || || ||||| | | ||||| || | ||||| Sbjct 175052 GAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGA 175111 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || || || | || || || ||||||||||| Sbjct 175112 CTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251076784024