Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11 120 3e-22 seq5 107 2e-18 >seq11 Length=671998 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| |||||||| || ||||| || | ||| || ||| | ||| | ||| || | Sbjct 438434 CAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 438493 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || ||||||| | | |||||||| || |||||||| || ||||| | || Sbjct 438494 GCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAA 438553 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||||| | ||| ||||||| | ||||| |||| |||||||| || | Sbjct 438554 TCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGC 438613 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || || ||||||||||| Sbjct 438614 CGGTCAAAGTCTTGACGAAGATCTGCAT 438641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || ||||||| | | |||||||| || ||||| ||||| || Sbjct 360084 ATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTT 360025 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | ||| ||||| | ||||| || | ||||| Sbjct 360024 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 359965 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| |||||||||||||| Sbjct 359964 CGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 359929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || | ||||| | | |||||||| || ||||| ||||| || Sbjct 438714 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTT 438773 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| | | | ||||| | | ||||| || | ||||| Sbjct 438774 GTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGAT 438833 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || |||||||||||||| Sbjct 438834 GGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 >seq5 Length=755036 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | ||| ||||| || | |||||| || ||||| || | ||| || ||| Sbjct 174934 CCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 174993 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||| || || || || ||||||| |||| ||||| || |||||| Sbjct 174994 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 175053 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || |||||||| | ||| ||||| | | ||||| Sbjct 175054 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACT 175113 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || ||||| || | || || || || |||||||| Sbjct 175114 TCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||| | |||| | ||||| || || || || ||||| Sbjct 175654 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175713 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || |||| ||||| || |||||||||||||| ||||| | || || |||||||| | Sbjct 175714 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175773 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | | ||||| || | ||||| || || || || ||||| || || Sbjct 175774 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACG 175833 Query 94997 AAGATCTGCAT 95007 ||||||||||| Sbjct 175834 AAGATCTGCAT 175844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||| | |||| | ||||| || || || || ||||| Sbjct 175198 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175257 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || |||| ||||| || |||||||||||||| ||||| | || || |||||||| | Sbjct 175258 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175317 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | | ||||| || | ||||| || ||||| || | || || || Sbjct 175318 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175377 Query 94997 AAGATCTGCAT 95007 || |||||||| Sbjct 175378 AAAATCTGCAT 175388 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||| | |||| | ||||| || || || || ||||| Sbjct 175426 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175485 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || |||| ||||| || |||||||||||||| ||||| | || || |||||||| | Sbjct 175486 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175545 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | | ||||| || | ||||| || ||||| || | || || || Sbjct 175546 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175605 Query 94997 AAGATCTGCAT 95007 || |||||||| Sbjct 175606 AAAATCTGCAT 175616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291065512640