Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13 168 6e-37 seq5 125 7e-24 seq11 116 3e-21 seq2 93.3 4e-14 >seq13 Length=613501 Score = 168 bits (186), Expect = 6e-37 Identities = 928/1451 (64%), Gaps = 45/1451 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || || | |||||||| | || | ||| || ||| |||| Sbjct 66244 TTGACGACCTGGAATTCACCAGCAAGTACACGACGAGAGTAAATGTTCGAAGTGTAGGGC 66185 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||| ||| ||| ||||| || ||||||||| |||| | Sbjct 66184 TCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAAC 66125 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | ||| || || || |||||||| || | |||| |||| | |||| ||||| Sbjct 66124 AAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGAGCGAAGCCCAGTCCCAG 66065 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 || || || || | ||| |||||||||| ||||| | |||| | ||||| Sbjct 66064 AGGTCGGAG--GGAGTGACGCCCCACATGTCATACTGAAGTTCTCCCTGGGAAGCGGGCG 66007 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCA-ACTCGCCTCCAGA 145354 ||||| | | ||| |||| | || | |||||| ||| ||| ||| Sbjct 66006 AACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACGATCG-CTCGAGA 65948 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 ||| || ||| || |||||| || ||| ||| | | ||| ||| | |||| Sbjct 65947 GCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCG 65888 Query 145415 TACGGCAT-GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | ||||| | || | | || ||||||||||| ||||| | || | |||||||| Sbjct 65887 -AAGGCATAACCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGG 65829 Query 145474 CCGATGTTTCATGTT-GCTC----ATCCTCGCCGACTCGATAGGATATCGATTACGGTCG 145528 || || |||||| | || | | || | || | ||| | | ||| |||| Sbjct 65828 ACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAGTA-GTTGAT----GTCG 65774 Query 145529 ATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAATGTGCCGCA-ACTTTTCAAAGT 145586 || || || |||||||| | ||| | | || | | | ||| || || ||| | Sbjct 65773 ATGATCTTGTTCAAGTTCTTGCA-GATGGCTTTGGCGACCTCATGCAGACGCTTGAAA-T 65716 Query 145587 CAAACCGAGCCTCGT--CAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACA 145644 | | || | | || || | | | || | || |||||| || ||||| || || Sbjct 65715 CGTA--GACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCCAAGTTGCA 65658 Query 145645 AACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTT 145704 || || ||| |||| | | ||| | | ||| |||| ||| | ||| || || Sbjct 65657 GACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTT 65598 Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATGT 145763 |||||| || || || | ||| || || | ||| ||| |||||||||||||| ||| Sbjct 65597 GATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAGAGGATGA 65539 Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACG 145821 | || || ||||| ||| | ||| | ||| || || || | ||| || Sbjct 65538 AAGGATTACCGGTCTCGGTCTGAGACTCGAGGAT--GGCGTACCAGAGCTTCTGGGCCTT 65481 Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 || ||| |||| ||||| | ||||| | |||||| ||||||| || Sbjct 65480 GACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGTC 65421 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 ||||||||| |||| |||||||| |||| ||| || ||||| |||||||| |||| || Sbjct 65420 ACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATT 65361 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | ||| | || ||| || | ||| || ||||| || ||||| | | || || || Sbjct 65360 CTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGC 65301 Query 146002 TTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCG 146059 ||||| ||| ||| | || ||| | || | ||| ||| |||| | Sbjct 65300 ACGAACTTCCTCCTTACCGTGGTTCTTGC-GCAAGTCGAGGA-ACTCGAAGACATCCGAG 65243 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACG 146116 ||||| || ||||| |||| || | ||| || || ||| ||||| ||||| ||| Sbjct 65242 TGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACG 65183 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | ||| | ||||||| ||||| || | ||||||| ||| ||| || || ||||| Sbjct 65182 TAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTG 65123 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 ||| | || | |||| || | ||| || | || | |||| ||| ||| Sbjct 65122 GTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCGATACCACCG 65063 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT---GCTA 146293 || |||||| || ||| ||| ||| || |||||||| ||||| || | | Sbjct 65062 GCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCA 65003 Query 146294 TCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 || |||| ||| || || || ||||| | | ||| | || || || || | Sbjct 65002 TC-CTTC--ATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTG 64946 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 || | ||| || || || ||||| ||| | ||| | ||||| || ||| Sbjct 64945 AAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATA 64886 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | |||||| | ||| ||||| || | |||||| ||||||| |||||| ||||| Sbjct 64885 GCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCATGTGCTGGGGA 64826 Query 146474 CGCTCCGCCAC 146484 ||||| || || Sbjct 64825 CGCTCAGCGAC 64815 >seq5 Length=755036 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||| ||||||||||| ||| Sbjct 175618 CCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 175677 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || ||||| || || |||| || ||||||||||| ||||| Sbjct 175678 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 175737 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 175738 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACT 175797 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || |||||||| ||||| || ||||| |||||||| Sbjct 175798 TCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||| ||||||||||| ||| Sbjct 175162 CCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 175221 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || ||||| || || |||| || ||||||||||| ||||| Sbjct 175222 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 175281 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 175282 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACT 175341 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || | || || |||||||||||||| Sbjct 175342 TCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175388 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||| ||||||||||| ||| Sbjct 175390 CCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 175449 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || ||||| || || |||| || ||||||||||| ||||| Sbjct 175450 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 175509 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 175510 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACT 175569 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || | || || |||||||||||||| Sbjct 175570 TCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175616 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| |||| || | || | ||| |||||| ||||||||||| ||| Sbjct 174934 CCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 174993 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || ||||| || || |||| || ||||||||||| ||||| Sbjct 174994 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 175053 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 175054 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACT 175113 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || | || || |||||||||||||| Sbjct 175114 TCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 >seq11 Length=671998 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| |||||||||||||| Sbjct 438643 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAG 438702 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 438703 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 438762 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | | ||||| Sbjct 438763 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 438822 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || || || |||||||| Sbjct 438823 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||||||||||| || |||||||| ||| Sbjct 438415 CCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 438474 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | ||||||||| || || || Sbjct 438475 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 438534 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||||| Sbjct 438535 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 438594 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | ||| || ||||| |||||||| Sbjct 438595 TCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 438641 >seq2 Length=2105630 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || ||| |||| || Sbjct 253381 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAG 253440 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| || ||| Sbjct 253441 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 253500 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 253501 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 253560 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||| | ||| ||||| ||| Sbjct 253561 TCAAGGGTGATGGTCTTACCTGTT 253584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012658396160