Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11 140 3e-28 seq5 123 2e-23 seq2 109 5e-19 >seq11 Length=671998 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || |||||||||| || || || | Sbjct 438641 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 438582 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| || ||||| Sbjct 438581 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 438522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 438521 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 438462 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 438461 ATCCAGAAGGAGTCGAC 438445 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || || |||| || || || || | Sbjct 438871 AGATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTT 438812 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || |||| || || || |||||||| || ||||| || |||| Sbjct 438811 CGGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATC 438752 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || || ||||| ||| | |||||| ||| ||| |||| ||||||| Sbjct 438751 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACA 438692 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || |||||| | ||| | ||| | || | || || ||| Sbjct 438691 ACATTCAGAAGGAGTCCACCCTTCATCTCGTTCTCCGCCTCCGTGGTGGT 438642 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || ||||||||||| | || ||||| ||| |||| || || || || Sbjct 359923 GTCAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAG 359982 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || ||| | ||| | |||| || || || |||||||| || ||||| || Sbjct 359983 TCTTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCT 360042 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || ||||| || ||||| || || ||| | || ||| |||||| | | || Sbjct 360043 GATCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGAC 360102 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 360103 TACAACATCCAGAAGGAGTCTACC 360126 >seq5 Length=755036 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || ||| ||||||| ||||| || || | Sbjct 175160 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175101 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| |||||||| || || || Sbjct 175100 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175041 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || | ||||| |||||| | ||||| |||||| Sbjct 175040 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 174981 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||| | || | || ||||| ||||| |||||| Sbjct 174980 ATTCAGAAGGAGAGCACCTTGCACCTCGTCTTGCGCTTGCGTGGAGGT 174933 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | |||||||| ||| ||||||| ||||| || || | Sbjct 175844 ATGCAGATCTTCGTCAAGACTCTGACCGGTAAGACGATCACTCTCGAAGTCGAGTCCTCG 175785 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| |||||||| || || || Sbjct 175784 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175725 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || | ||||| |||||| | ||||| |||||| Sbjct 175724 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175665 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || |||| | ||| Sbjct 175664 ATTCAGAAGGAGAGCACCTTGCAT 175641 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || ||| ||||||| ||||| || || | Sbjct 175388 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175329 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| |||||||| || || || Sbjct 175328 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175269 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || | ||||| |||||| | ||||| |||||| Sbjct 175268 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175209 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || |||| | ||| Sbjct 175208 ATTCAGAAGGAGAGCACCTTGCAT 175185 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || ||| ||||||| ||||| || || | Sbjct 175616 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175557 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| |||||||| || || || Sbjct 175556 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175497 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || | ||||| |||||| | ||||| |||||| Sbjct 175496 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175437 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || |||| | ||| Sbjct 175436 ATTCAGAAGGAGAGCACCTTGCAT 175413 >seq2 Length=2105630 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || |||| ||||| ||||| | |||| ||| | ||| | |||| Sbjct 253584 AACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGC 253525 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || || || |||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 253524 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAA 253465 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| |||| || |||| ||| || || || |||||| Sbjct 253464 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAGCATCCAGAAGGAGTCCACC 253410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727877229560