Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11 161 2e-34 seq5 140 6e-28 seq12 127 4e-24 seq2 123 5e-23 seq10 86.0 1e-11 >seq11 Length=671998 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || |||||||| || || ||||| ||||| ||| Sbjct 438643 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAG 438702 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || || ||| Sbjct 438703 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 438762 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| |||||||| || |||||||| | | || || Sbjct 438763 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 438822 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 438823 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || || | Sbjct 360155 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAA 360096 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || ||||| | || || || || ||| Sbjct 360095 AGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 360036 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 360035 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 359976 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| || || || |||||||| Sbjct 359975 TCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 359929 Score = 152 bits (168), Expect = 9e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || ||||| || |||||||| || |||||||| || | |||||||| | |||||| || Sbjct 438445 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 438504 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || ||||| | || || || || ||||| || |||||||| |||||||| |||||| Sbjct 438505 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 438564 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||||||||||| | || || || || | |||||||| || || || | ||| Sbjct 438565 ACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTC 438624 Query 68445 TTGACGAATATCTGCAT 68461 |||||||| |||||||| Sbjct 438625 TTGACGAAGATCTGCAT 438641 >seq5 Length=755036 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || ||||| || | |||||| || | ||| | ||| ||| || || ||||| || ||| Sbjct 174931 TTACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 174990 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | || || || | ||||| || || || || | || || ||||| || Sbjct 174991 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175050 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| ||||||||||| || ||||| |||||||| ||||||||||| | || || Sbjct 175051 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCG 175110 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | ||||| || ||||| || | ||||||||||| |||||||| Sbjct 175111 ACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||| || || ||||| || ||||| || || | || || || | ||||| || || || Sbjct 175197 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 175256 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 || | || || ||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct 175257 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 175316 Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||||||||||| | || || ||||| | ||||| || ||||| || | |||||||| Sbjct 175317 GTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGAC 175376 Query 68450 GAATATCTGCAT 68461 ||| |||||||| Sbjct 175377 GAAAATCTGCAT 175388 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||| || || ||||| || ||||| || || | || || || | ||||| || || || Sbjct 175425 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 175484 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 || | || || ||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct 175485 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 175544 Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||||||||||| | || || ||||| | ||||| || ||||| || | |||||||| Sbjct 175545 GTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGAC 175604 Query 68450 GAATATCTGCAT 68461 ||| |||||||| Sbjct 175605 GAAAATCTGCAT 175616 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||| || || ||||| || ||||| || || | || || || | ||||| || || || Sbjct 175653 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 175712 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 || | || || ||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct 175713 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 175772 Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||||||||||| | || || ||||| | ||||| || || || || || |||||||| Sbjct 175773 GTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGAC 175832 Query 68450 GAATATCTGCAT 68461 ||| |||||||| Sbjct 175833 GAAGATCTGCAT 175844 >seq12 Length=654828 Score = 127 bits (140), Expect = 4e-24 Identities = 369/559 (66%), Gaps = 23/559 (4%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 ||||| || ||||||||||| || || ||||||| | | || | ||| |||| Sbjct 175375 TCAAGAAA-CCAGAGTCGTGCGAGACGATGATGGCAGTGGCCGTCTTGAGGTTGCAGAGG 175317 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | | | ||| |||||| |||||||| |||||| || || ||||| || || Sbjct 175316 TAGTCGGTAATCCACTTGACGTTGACGACGTCCAAGTGGTTAGTGGGCTCGTCAAGGAGG 175257 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || ||||| || | | ||| ||||| || | || | | |||||| ||||| || ||| Sbjct 175256 AGAATGTCGGCCTTGAAGAGAATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCG 175197 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGC 225682 || || | |||| | |||| || | || ||||| |||||| ||| ||||| Sbjct 175196 GAGAGACCGGCGATGGGC---GAGTTCTGACGAGCATCGTCGAAGCCGACCTCGTGGAGC 175140 Query 225683 GTCTGGATAATGCGCTCG-----GGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737 |||| || || |||| ||| | || ||| | ||| | | |||| ||| Sbjct 175139 GTCTTGACG--GC-CTCGTCCTTGGACA--TG-GAGAG---ACGCTCG--TCGGCGCAGA 175091 Query 225738 GGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCG 225797 | ||| |||||||| || | || |||||| |||||| || |||||| | Sbjct 175090 TAAAGTCAAGGACGGTCATCTCACCTTCGGAACCGTCAAGGTCGTGCTCGACGTACCAGG 175031 Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | |||| || | ||||| ||||| | ||||||||| | || ||||| | | Sbjct 175030 TGCGGACCTCTTCGGGCGAAGGGAAACCCTCGACCTGGCCATTGGTGATGGCACGCATGA 174971 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| ||| || | ||||| ||||| || ||||| | | || ||||| | Sbjct 174970 GGGTCGACTTTCCGGAACCGTTACGACCGCAAAGACCGTATCGGTGGCCACGCTTAAGAC 174911 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 |||| | || ||| ||||| |||||| |||| ||||| || ||||||| || | || Sbjct 174910 GGAGGGTGGCGGTGTTGAGGAGAATCTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGC 174851 Query 225978 ACAGGTCCTCACCCTCCTC 225996 | ||||| ||||||||||| Sbjct 174850 AAAGGTCTTCACCCTCCTC 174832 Score = 100 bits (110), Expect = 5e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 ||||| | |||||||| ||||| | |||||| || ||||| || |||| ||| | |||| Sbjct 176342 AGCGCAGCGAGCGACTCACGGTCCAAGAAGTTGGTGGGCTCGTCGAGGACGATGATGTGG 176283 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | |||| ||| ||||||| || | ||| ||||||||||| |||||||| ||| Sbjct 176282 GGTCGTCGCCAGGTGGCGGCACCAAGAACGACCTTGACCTTCTGACCACCAGAGAGACCG 176223 Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAA 224657 || || ||| | ||||| ||| | || ||||||| Sbjct 176222 CGCATGGTGTTGTGCGAGGTGAACTCGCGCTCGAGACCAA 176183 >seq2 Length=2105630 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||| | || || ||| Sbjct 253381 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAG 253440 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || |||||||| || Sbjct 253441 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 253500 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 253501 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 253560 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 253561 TCAAGGGTGATGGTCTTACCTGT 253583 >seq10 Length=723576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177072 AGACCGAGAATTTGTTTGATGGCAGTAATCTCGGCGTTGTTAGTAATACTAGACACAGAC 177131 ||||||| || | ||||| || | |||||||| || || | || | || | Sbjct 312715 AGACCGATGATCTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTC 312774 Query 177132 GCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCGACCC 177191 || ||||||||||| || ||||||||||| || ||||||| ||||| || |||||| Sbjct 312775 GCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCC 312834 Query 177192 ACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAATGAGC 177251 || | |||| ||||| ||||||| ||| |||||||| || || | ||||| Sbjct 312835 ACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGA 312894 Query 177252 GTGCA 177256 ||||| Sbjct 312895 GTGCA 312899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622123513280