Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq11 118 9e-22 seq5 102 7e-17 >seq11 Length=671998 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | || || || || |||||||||||||| Sbjct 438640 ATACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCC 438699 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || |||||| ||||||||||||| || || || Sbjct 438700 GAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 438759 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | |||| |||||| | | ||| Sbjct 438760 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCG 438819 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || ||||| |||||||| Sbjct 438820 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | || ||| |||||| || || |||||| Sbjct 360125 GTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGCTTACCA 360066 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| || || || ||||| ||||| ||||| ||||| || Sbjct 360065 GCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 360006 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||||| || | ||| | ||| || || || || ||| Sbjct 360005 ACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTT 359946 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 359945 TTAACAAAGATCTGCAT 359929 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || || || || |||||||| ||| Sbjct 438414 ACCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 438473 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||||||||| || || ||||| ||||||||||||| || || || || Sbjct 438474 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGG 438533 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || || ||||| |||||| || | | || | |||||| | ||| ||||| Sbjct 438534 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGAC 438593 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || |||||||||| ||| || || || |||||||| Sbjct 438594 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 438641 >seq5 Length=755036 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||| | ||| || || || ||||| |||||||| || Sbjct 175654 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175713 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| |||||||| ||||| ||||| ||||| || | | Sbjct 175714 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175773 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | ||| ||||| || | || | ||| || ||||||||||| || || Sbjct 175774 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACG 175833 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 175834 AAGATCTGCAT 175844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||| | ||| || || || ||||| |||||||| || Sbjct 174970 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175029 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| |||||||| ||||| ||||| ||||| || | | Sbjct 175030 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175089 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | ||| ||||| || | || | ||| || || |||| || || || Sbjct 175090 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175149 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 175150 AAAATCTGCAT 175160 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||| | ||| || || || ||||| |||||||| || Sbjct 175198 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175257 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| |||||||| ||||| ||||| ||||| || | | Sbjct 175258 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175317 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | ||| ||||| || | || | ||| || || |||| || || || Sbjct 175318 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175377 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 175378 AAAATCTGCAT 175388 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||| | ||| || || || ||||| |||||||| || Sbjct 175426 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175485 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| |||||||| ||||| ||||| ||||| || | | Sbjct 175486 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175545 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | ||| ||||| || | || | ||| || || |||| || || || Sbjct 175546 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175605 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 175606 AAAATCTGCAT 175616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134277110688