Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 351 2e-91 seq23 280 3e-70 seq9 105 1e-17 >seq13 Length=613501 Score = 351 bits (388), Expect = 2e-91 Identities = 1029/1578 (65%), Gaps = 53/1578 (3%) Strand=Plus/Minus Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCC 243937 ||||| ||||| |||| | ||| | | || || ||||||||| ||||| | || Sbjct 66457 TTGAGCGACTGCGACTGGCAAATGAAAGCACCTCGATCGGCGGCCATGTCGATGATGGCC 66398 Query 243938 TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG 243997 ||||| || ||||| | | |||||||||| ||||| | ||||||| || | Sbjct 66397 TTCTGCGAGATCTCCCAGACAGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGG 66338 Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 | ||| || | ||||| ||| |||||| || | ||| | |||||||| || Sbjct 66337 ACGTTTTGGATGGAGCCGGCGTGAGCGATGATTCGGTTTTTCATTGTGTCGTTCCAAAGT 66278 Query 244058 CCCAAGCGCTCCAGCGCCTCG-------ACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 | | | || | | |||| |||||| | || || ||||| || || || Sbjct 66277 CTCT---GTTCGACCAACTCGCGGAGCAACCAGGGG----TTGACGACCTGGAATTCACC 66225 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || || || || ||| | ||| || ||||||| || ||| || ||| Sbjct 66224 AGCAAGTACACGACGAGAGTAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCC 66165 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || ||||| || ||||| |||||||| | || || || ||| | | || Sbjct 66164 CAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACC 66105 Query 244231 GTGCCTCTGGATGCGGAGTCT-GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289 |||| | || | || || |||| ||||||||| |||||| | Sbjct 66104 GTGCTTGGCAAT-CTTAGCCTTGAGCGAAGCCCAGTCCCA---------GAGGTCGGAGG 66055 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 | ||| ||||||||||||| |||| || |||| | |||| || | ||| | Sbjct 66054 GAGTGACGCCCCACATGTCATACTGAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATG 65995 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTAGTAG 244408 || ||||| |||| ||| |||| || || | ||| ||||| ||||||| ||| Sbjct 65994 TCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCA-CGATCGCTCGAGAGCGGCGTGATAG 65936 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 ||||||||||||||| | ||||| || |||| | | ||||| ||| Sbjct 65935 ATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCGAAGGCATAACCC 65876 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 || |||||||| | ||||| || ||||| || ||||| |||||||| | ||| ||| || Sbjct 65875 ATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGGACGGTGACGCATG 65816 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 ||||| || ||||| |||||||| ||||| |||||| | |||||| | ||| Sbjct 65815 TTGGATCGACGAGCTTCTTCAACGGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTC 65756 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 | ||| | |||| || ||| ||| || ||||| | | || | | | Sbjct 65755 TTGCAGATGGCTTTGGCGACCTCATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGG 65696 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 ||||| | | | |||||||| | ||||| ||||||||| || ||| Sbjct 65695 TCGATGAAGGT------------GGGGAGGGCGATGGAGGCCAAGTTGCAGACAGCGACC 65648 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || || | | | ||||| || || |||||||||||||| |||||||||||| || Sbjct 65647 TCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTTGATGGTACCG 65588 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTT-GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCC 244827 |||| || || ||||||||| ||| |||| ||||||||||||| ||||| || || Sbjct 65587 AGGTTCTTCTGGTTGGACTTGCGGTTAGCAG-CGTCCTTGTAGAGGATGAAAGGATTACC 65529 Query 244828 GGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT--CCTG 244885 ||||||| ||| | |||||| | || |||||| | | |||||||| || || Sbjct 65528 GGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTT 65469 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 ||| | ||||| ||||||||||| ||| || ||| |||||| || || Sbjct 65468 ACAGCGT--CCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGTCACCGTAGCAG 65411 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 ||| | |||||||||||| ||||||||||| ||| ||||| | || |||| Sbjct 65410 TCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACC 65351 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 |||| ||||||||| ||||||| ||| || || | |||||| || | || | || Sbjct 65350 CTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCC 65291 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| || |||||| | || || | || || ||||| || |||||| ||||| Sbjct 65290 TCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCA 65231 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 ||||||| ||| | ||| || || |||||||| || || ||||| | | | ||||| Sbjct 65230 ATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGA----CGTAACGAGC 65175 Query 245186 ----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 |||||||| || || | ||||| || ||||| | |||||||| || Sbjct 65174 AGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGC 65115 Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||| | ||| | || | | | | |||| | || | || |||||| ||| Sbjct 65114 AATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTT 65055 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||| | ||| ||| |||||| |||||| || || || || ||| |||||| Sbjct 65054 GGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCAT 64995 Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 | ||| || || || || || ||||| || | |||| | | | |||||| || || || Sbjct 64994 GGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGG 64935 Query 245422 GCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| Sbjct 64934 CGAGGCATGAGTAAAGTA 64917 >seq23 Length=283388 Score = 280 bits (310), Expect = 3e-70 Identities = 497/715 (70%), Gaps = 16/715 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||| || ||||| Sbjct 279011 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 279070 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||||| || || || ||||| ||| || Sbjct 279071 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 279130 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || |||||||||||||| |||||||| || ||||| |||||||| | | | Sbjct 279131 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 279190 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| | || || || ||||||||||| |||||||| || Sbjct 279191 TTCAGTTCCGAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATGATG 279250 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| || ||| | || || |||| ||||||| || |||| Sbjct 279251 GAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGAG 279310 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 |||| | || || | ||| | ||||| || ||| | ||||||||||||| || Sbjct 279311 CAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAGAAGGCCGAA 279370 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| || |||||| | | | | || || |||| ||| | || || |||||| Sbjct 279371 TGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTGCCTTT 279430 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||||||||| || ||||||||||| ||| |||| ||||| ||||||||||||||| || Sbjct 279431 GCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAGAAG 279490 Query 42777 -AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || |||||||| ||||||||||| ||||| |||||| | |||||||| || Sbjct 279491 CGCGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 279549 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA--- 42892 || | || |||||||||||||| ||| |||||||||| | |||| | || | Sbjct 279550 TCACACCGATTTTGCCTGCCTCCTCTTC---AGCCACCTCA---AGAAGCGCGCGCACCC 279603 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 || |||| ||||| | ||||| || || ||||||| |||||| | || || Sbjct 279604 CGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTTCTTGACCCA 279663 Query 42953 GTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || | || ||| | || ||||||||||||| | ||||| ||||||| Sbjct 279664 ATCAATTCCTTGTG-CGATGATCGGCATGAACCAAACGTTGATGTGTCAGTACAT 279717 >seq9 Length=877262 Score = 105 bits (116), Expect = 1e-17 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 242949 TTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACC-TGCTCAACAAGAG 243007 ||||| || ||||||||| | || || |||||||||||||| |||| ||| ||| | || Sbjct 646705 TTCCCTGAAAGGACCACTGCTATTGGTCAGATGATCAACTCCTACCTTGCCCAA-ACAAG 646647 Query 243008 CGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 |||||| |||||||| | | | |||||||| ||||| |||||||| |||||| Sbjct 646646 CGATCTTGACGATCAGGCCATTCACCTCCTCTTCTCCGCCAACCGTTGGGAA 646595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338916698240