Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq13 214 2e-50 seq10 140 4e-28 seq23 129 7e-25 >seq13 Length=613501 Score = 214 bits (236), Expect = 2e-50 Identities = 1111/1748 (64%), Gaps = 51/1748 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| | ||||||||||| |||| ||||||| | || | |||||||||| Sbjct 66550 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTG 66491 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | || || || ||| || | || || | || || || ||||| Sbjct 66490 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 66431 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 || ||||| || ||||| || || | ||||| | ||| ||||| ||||| || Sbjct 66430 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 66371 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTG 113836 ||||| ||||| ||| || |||||| | || |||||||||||||| | | || Sbjct 66370 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCC----GGCGTG 66315 Query 113837 ACC-ATGA---GATCCTTCATA---TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 113889 | | |||| | | ||||| || || ||| || | ||| || || ||| Sbjct 66314 AGCGATGATTCGGTTTTTCATTGTGTCGTT---CCAAAGTC---TCTGTTCGACCAACTC 66261 Query 113890 CACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 113945 ||| | ||||| || || ||||| || || || | ||| || | Sbjct 66260 GCGGAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAAA 66202 Query 113946 TATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTG 114005 | || | ||||| ||||| |||||||| ||| |||||||| || ||| || || | Sbjct 66201 TGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAG 66142 Query 114006 TGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGA 114065 ||||||||||||||| | || |||||| ||||| | | ||| |||||| Sbjct 66141 TGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGA 66082 Query 114066 GGGCGTCCCAGTCGTAG---TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 | | ||||||| || | | || | ||| ||||| ||| |||| || Sbjct 66081 GCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGCCC---CACATGTCATACTGAAGTT 66025 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATT 114182 || ||||| || ||||| || | |||||||||| | ||| | ||| ||||| | Sbjct 66024 CTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACT 65965 Query 114183 CGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 || | | |||| ||||| || |||||||| || ||||| || || | | |||| Sbjct 65964 CGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGA 65906 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 ||||| ||| || || || | | || ||| |||| |||||||| || Sbjct 65905 CGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGACCCTGA 65846 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 114361 ||||||| || || || || || | ||| || || ||||| || ||||| || Sbjct 65845 ACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAG 65786 Query 114362 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 114421 | || | ||||| | | | || | || ||| || | || | || ||||| || Sbjct 65785 TAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCAGA 65726 Query 114422 TTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 | | |||| | || | || | | || | | || |||||||| || || Sbjct 65725 CGCTTGAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGC 65667 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || || || |||| | |||||| ||| |||||| || ||||| || || | || Sbjct 65666 CAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTT 65607 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600 || | ||| ||||| || | |||||| || || ||||| |||| || |||||||| Sbjct 65606 GGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGTA 65547 Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGG 114659 || ||| | || | || ||||| || || |||| ||| || || | ||||| | || | Sbjct 65546 GAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTG 65487 Query 114660 CGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAA 114719 | || | || || || || ||||| ||||||| |||||| |||| Sbjct 65486 GGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAA 65428 Query 114720 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 114779 |||| ||||| | || | || || || || | ||||| | ||| ||||| | Sbjct 65427 ACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAAT 65368 Query 114780 GACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGAT 114839 ||| || ||| || | |||||||||||| || |||| ||| ||||| ||||||| | Sbjct 65367 CGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCT 65308 Query 114840 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 | || ||| |||| || | || || || ||||| || | || || | || || Sbjct 65307 CACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACAT 65248 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCT 114953 ||| |||||| || || | ||| | || | | || | |||| |||| | | Sbjct 65247 CCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTACCACCTT 65191 Query 114954 GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT--CAGA 115011 ||| || || | || ||| || || || || ||||| || | |||||| | | || Sbjct 65190 GGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGA 65131 Query 115012 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA-TGGATGTGCATAC 115070 || || || || ||| ||| | | | || || ||||||| | || Sbjct 65130 --CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCAC-GAATGCAGTGGATGTTGAGAC 65074 Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGT 115130 | ||||| || || ||| ||||| || || | |||| || |||||||||||| Sbjct 65073 CGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGT 65014 Query 115131 CGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 115190 ||||||||||| |||| | | || |||||| || ||| | || || || |||| Sbjct 65013 CGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTAC 64954 Query 115191 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAG 115249 | ||||||||||| ||||| | || | || || ||| ||| ||||| | ||| Sbjct 64953 CGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAC 64895 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | | |||||| | ||||||||||||| | ||| ||||| | |||| Sbjct 64894 GTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCATG 64835 Query 115310 TATTGGGG 115317 | ||||| Sbjct 64834 TGCTGGGG 64827 >seq10 Length=723576 Score = 140 bits (154), Expect = 4e-28 Identities = 290/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || || || |||||| || || | || | |||||||||||| ||||| || Sbjct 312573 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 312632 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | || | Sbjct 312633 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTGACGT 312691 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | | |||| ||| || || || ||||| | ||||| ||||| | |||| ||| | Sbjct 312692 CGAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 312751 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 | ||| || | | || || |||||||| | ||| ||||| || |||| Sbjct 312752 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 312811 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | |||||||| | |||||||| ||| | ||||||||| || || || | ||| |||| Sbjct 312812 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 312871 Query 172875 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 172933 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 312872 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 312930 Query 172934 GCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTGCG---GGCACCATCTGTCTTC 172990 ||||| || | ||||||||| || ||| ||| |||| | ||||| |||||| Sbjct 312931 GCATCTTCAAGCTTGGGAATGTTGGTGATTCTGG---TGCGCTTGTGTCCATCGGTCTTC 312987 Query 172991 TTGAG 172995 || || Sbjct 312988 TTAAG 312992 >seq23 Length=283388 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || |||||| || || Sbjct 279565 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 279506 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| |||| ||| || || ||||||||||| Sbjct 279505 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 279446 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || || || || |||| |||||||||||| |||| Sbjct 279445 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 279405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353420793920