Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 131 2e-25 seq5 96.9 3e-15 seq2 82.4 8e-11 >seq11 Length=671998 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || || || |||||||| || | || |||||| | ||| Sbjct 438430 AGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 438489 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | ||||| |||||||| || || ||||| || || || || Sbjct 438490 TCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 438549 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| || || || || | ||| | |||| Sbjct 438550 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 438609 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||||| || ||||| || ||||| Sbjct 438610 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 438641 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || |||||||||||||| | || ||| || | || Sbjct 438658 AGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 438717 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| |||||||| || || ||||| ||||| || || Sbjct 438718 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 438777 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | || | |||| Sbjct 438778 TGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 438837 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || || || || ||||| Sbjct 438838 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | |||||| | ||| Sbjct 360140 AGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCT 360081 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||| |||||||| || || ||||||||||| || || Sbjct 360080 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 360021 Query 64352 TGTATTTT 64359 || || || Sbjct 360020 TGGATCTT 360013 >seq5 Length=755036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||||| |||| || || ||||| || ||| | Sbjct 174970 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175029 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| |||||||| ||||| || || || || || ||| ||| Sbjct 175030 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175089 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || ||||| | ||| | ||||| || ||||| || || ||| Sbjct 175090 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175149 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 175150 AAAATCTGCAT 175160 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||||| |||| || || ||||| || ||| | Sbjct 175198 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175257 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| |||||||| ||||| || || || || || ||| ||| Sbjct 175258 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175317 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || ||||| | ||| | ||||| || ||||| || || ||| Sbjct 175318 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175377 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 175378 AAAATCTGCAT 175388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||||| |||| || || ||||| || ||| | Sbjct 175426 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175485 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| |||||||| ||||| || || || || || ||| ||| Sbjct 175486 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175545 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || ||||| | ||| | ||||| || ||||| || || ||| Sbjct 175546 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACG 175605 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 175606 AAAATCTGCAT 175616 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||||| |||| || || ||||| || ||| | Sbjct 175654 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAG 175713 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| |||||||| ||||| || || || || || ||| ||| Sbjct 175714 ATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 175773 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || ||||| | ||| | ||||| ||||||| ||| || ||| Sbjct 175774 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACG 175833 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 175834 AAGATCTGCAT 175844 >seq2 Length=2105630 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || ||| |||| || | || |||||| |||| Sbjct 253396 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCC 253455 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||| |||||||||||||| || || || || || || Sbjct 253456 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 253515 Query 64352 TGTATTTT 64359 || || || Sbjct 253516 TGGATCTT 253523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644650106560