Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq13 320 2e-82 >seq13 Length=613501 Score = 320 bits (354), Expect = 2e-82 Identities = 1104/1700 (65%), Gaps = 40/1700 (2%) Strand=Plus/Plus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || || ||| || ||| | ||| || | |||| ||| | ||||| || Sbjct 64770 TTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAGGTCGCTGAGCGTCCC 64829 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTTG 93852 || || || | ||||| ||||| |||| ||||||||||| ||||| || || | | Sbjct 64830 CAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCTATT 64889 Query 93853 CGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCACCCCGACCCTGTTCAA 93911 | | | || |||| | | ||| | ||| |||| || | || || || ||||| Sbjct 64890 GAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCATG-CCTCGCCAACGCTCTTCAA 64948 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTC 93971 ||| || ||||| || ||| | || ||||||||||| | || | |||| ||||| Sbjct 64949 CGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTC 65008 Query 93972 CATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGG 94031 ||| ||| || | ||||| ||||||| |||||| | ||||| || ||| || || Sbjct 65009 GATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGG 65068 Query 94032 AATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGG 94091 ||||| ||| ||||| | | |||| | || || ||||| ||||||||| || Sbjct 65069 TATCGGTCTCAACATCCACTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGG 65128 Query 94092 CACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGA 94151 | |||||| |||| || |||||||| |||||||||||| | || || ||||| || Sbjct 65129 TGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGA 65188 Query 94152 CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGA 94211 ||| |||||| | | | ||| | || || |||| | ||||| |||||| |||| Sbjct 65189 CCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGA 65248 Query 94212 CGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGA 94271 || | ||| ||||| |||| ||||||||||| || || | | ||| | || Sbjct 65249 TGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGA 65308 Query 94272 CCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGC 94331 |||||||||||||| ||||| || || || || ||||| | |||||| | || || Sbjct 65309 GCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGA 65368 Query 94332 CTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TT 94390 ||| || | || || || || || ||||| || ||||| | || | || | Sbjct 65369 TTGGTCGCTCATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTGCTACGG-TGACGAGT 65427 Query 94391 TTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTA---TGGATG 94447 |||| | || | || ||||| | |||| | | | | ||| | | | | Sbjct 65428 TTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGG-ACG--CTGTAAGCGAACCGTCAAGG 65484 Query 94448 CTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCT 94507 | |||||| ||| | ||| | || ||| ||||| |||| || | |||| Sbjct 65485 CCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCC 65544 Query 94508 TGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCT 94567 | | ||||||| ||| ||| ||||||||||||| || ||||||| |||||| ||| Sbjct 65545 TCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCT 65604 Query 94568 CGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACC 94627 | || || |||||||| || ||||||| || | || || ||| | ||||| || ||| Sbjct 65605 CCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCTGCAACT 65664 Query 94628 TGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC--ACGTCTACTGCTTCGTT 94685 ||| ||||||| ||| |||| ||| | ||| ||| | |||||| ||| Sbjct 65665 TGGCCTCCATCGCCCTCCCCACCTTCAT-CGACCCTGTTACCAAGGTCTACGATTTCAAG 65723 Query 94686 CGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAAT 94745 || |||| | ||| |||| | || | |||| |||||| | | || Sbjct 65724 CG-TCTGCATGAG---------GTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCAT 65773 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGG--CGGAGAACTCAAACCTGAAGCATCGGCCC 94803 ||||| |||| ||||||||| || | || || || ||| || || || ||| Sbjct 65774 CGACATCAACTACTACCCCGTTGAAGAAGCTCGTCGA--TCCAACATGCGTCACCGTCCC 65831 Query 94804 ATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGAC 94863 ||||| ||||| || |||||| |||| || || | |||| ||| || ||| ||| Sbjct 65832 ATCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGGGTTATGCCTTCGAG 65891 Query 94864 TCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATG 94923 || || ||| ||||||| || | || ||||| | ||| ||| ||| || | Sbjct 65892 TCCCCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTATCACGCCGCTCTC 65951 Query 94924 AAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATC 94982 | | ||| | | ||||| || ||| ||| | |||| | | || || || Sbjct 65952 GAGCGATCGTGCGAGTTGGCTCA----GGAGCACGGCACCTACGAGACATACCAAGGTTC 66007 Query 94983 GCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTA 95042 |||| ||||| |||||| ||| | ||||| || | ||||| | || | Sbjct 66008 GCCCGCTTCCCAGGGAGAACTTCAGTATGACATGTGGGGCGTCACTCCCTCCGACCTCTG 66067 Query 95043 CGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG- 95101 ||||||| | || ||| | || ||| |||||| | ||| | || |||| Sbjct 66068 GGACTGGGCTTCGCTCAAGGCTAAGATTGCCAAGCACGGTCTTCGTAACTCACT-CTTGT 66126 Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 |||| ||||||||||| || || || |||||| | ||| |||||||| ||||| | Sbjct 66127 TGGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGC 66186 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 ||| ||| || ||| | ||| | || || || || || ||||||| ||| ||||| Sbjct 66187 CCTACACTTCGAACATTTACTCTCGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAACC 66246 Query 95222 AGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 | || || || || ||| | | | | ||| |||| | || |||| Sbjct 66247 CCTGGTTGCTCCGCGAGTTG--GTCGAACAGAGACTTTGGAACGACACAATGAAAAACCG 66304 Query 95280 ACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGG 95338 | | | ||| | | ||||||| |||| ||| |||| || || || |||||| Sbjct 66305 AAT-CATCGCTCACGCCGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTATCAAGA 66363 Query 95339 CGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCC 95398 |||||||||||| || ||||||||| ||||| | || ||||| || |||| | Sbjct 66364 AGCTCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGCCGATC 66423 Query 95399 GCGGGCCCTTCATCTGCCAG 95418 | || | ||||| |||||| Sbjct 66424 GAGGTGCTTTCATTTGCCAG 66443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723051583040