Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 147 2e-30 seq5 125 7e-24 seq11 98.7 1e-15 seq2 82.4 8e-11 >seq13 Length=613501 Score = 147 bits (162), Expect = 2e-30 Identities = 366/543 (67%), Gaps = 27/543 (5%) Strand=Plus/Minus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 ||| || || |||| || ||||| || ||| |||| | | ||||| | ||| || Sbjct 65678 GGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTC 65619 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT-GC 153714 || |||||||||| ||| || ||| || | || | ||| ||| ||||| || || Sbjct 65618 GGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGC 65559 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACC 153774 | ||||| ||| |||| ||| | || ||||||||| || | |||| ||| | Sbjct 65558 A-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG-CG 65501 Query 153775 TATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 || || | ||| || || || | |||| ||||| |||||| |||||| Sbjct 65500 TACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCG 65441 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||||||||||| |||||||||||||| |||||||| |||| | || ||| Sbjct 65440 TAGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCAC 65381 Query 153894 ATCAGCGACCACATATCG----TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 || |||||||| |||| || || | ||| | |||||| ||||| || ||||| Sbjct 65380 ATGAGCGACCA---ATCGCCATTCTGC-TCGACCCTCTTCATGAAGAGATCGGGGACCCA 65325 Query 153950 GAGCGCGTACATGAGGTCGCGCGC-----CTTGCAATCCTCCGCGCCCATGTTGCGTTTC 154004 || ||||| | ||| || || || ||| | |||| || | ||||| | Sbjct 65324 AAGAGCGTAGAAGAGCTCACGGGCACGAACTTCC--TCCTTACCGTGGTTCTTGCG---C 65270 Query 154005 AGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC 154063 | | || | || | | ||| || | |||||| || |||||||||| || | |||||| Sbjct 65269 AAGTCGAGGAACTCGA-AGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC 65211 Query 154064 TTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCAT 154120 |||| || || || || ||||||| || | | ||||||||||| || | ||| Sbjct 65210 AGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCAT 65151 Query 154121 GGG 154123 ||| Sbjct 65150 GGG 65148 >seq5 Length=755036 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || |||||||||||| ||||| | | | Sbjct 175653 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 175712 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | ||||| ||||| ||||| |||||||| ||||| ||| || || | ||| Sbjct 175713 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 175772 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||| | ||||| || |||| || | ||| ||||| |||||||| || | Sbjct 175773 G-TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGA 175831 Query 138602 CAAAAATCTGCAT 138614 | || |||||||| Sbjct 175832 CGAAGATCTGCAT 175844 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| ||||| || | || | | | |||||| ||||||||||||||| Sbjct 174934 CCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 174993 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||| ||||| | | |||| | ||||| ||||| ||||| Sbjct 174994 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 175053 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| || || | |||| || | |||||| | ||||| || Sbjct 175054 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCCGAGGACTCGAC 175112 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||| || || |||| || || || ||||||||||| Sbjct 175113 TTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || |||||||||||| ||||| | | | Sbjct 175197 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 175256 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | ||||| ||||| ||||| |||||||| ||||| ||| || || | ||| Sbjct 175257 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 175316 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||| | ||||| || |||| || | ||| || || |||| || || | Sbjct 175317 G-TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGA 175375 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 175376 CGAAAATCTGCAT 175388 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || |||||||||||| ||||| | | | Sbjct 175425 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 175484 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | ||||| ||||| ||||| |||||||| ||||| ||| || || | ||| Sbjct 175485 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 175544 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||| | ||||| || |||| || | ||| || || |||| || || | Sbjct 175545 G-TCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGA 175603 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 175604 CGAAAATCTGCAT 175616 >seq11 Length=671998 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || || ||||| || ||||| | | Sbjct 360122 GACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCA 360063 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || ||||| ||||| ||| || || | Sbjct 360062 AAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 360003 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | ||| ||||| || || ||||| Sbjct 360002 TTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTA 359943 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 359942 ACAAAGATCTGCAT 359929 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | | |||||||| ||||||||||| || | ||||| ||||| Sbjct 438660 AACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTC 438719 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||| || || || | |||| |||||||| || || || || || ||||| ||||| Sbjct 438720 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 438779 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 ||| || || | |||| || | |||||| | | ||| ||||||| || | || | Sbjct 438780 GATCTTAGCCTTGACATTG-TCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCT 438838 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || || ||||| |||||||| Sbjct 438839 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 >seq2 Length=2105630 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||| ||||||| | || || ||||||||| || ||||| | | Sbjct 253414 GACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCA 253473 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 253474 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 253533 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | |||||||| ||||||||||| | || | || ||||| || Sbjct 253534 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 253583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262251121280