Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq11 87.8 2e-12 >seq5 Length=755036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| || || || | |||||||| |||||||| || ||||| ||||| || Sbjct 175690 TCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 175749 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || |||| || | |||||| || ||||||||||||||||| | | Sbjct 175750 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATC 175809 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| || || || || ||||| Sbjct 175810 GTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| || || || | |||||||| |||||||| || ||||| ||||| || Sbjct 175006 TCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 175065 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || |||| || | |||||| || ||||||||||||||||| | | Sbjct 175066 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATC 175125 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || ||||| ||||| Sbjct 175126 GTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| || || || | |||||||| |||||||| || ||||| ||||| || Sbjct 175234 TCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 175293 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || |||| || | |||||| || ||||||||||||||||| | | Sbjct 175294 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATC 175353 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || ||||| ||||| Sbjct 175354 GTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175388 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| || || || | |||||||| |||||||| || ||||| ||||| || Sbjct 175462 TCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 175521 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || |||| || | |||||| || ||||||||||||||||| | | Sbjct 175522 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATC 175581 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || ||||| ||||| Sbjct 175582 GTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175616 >seq11 Length=671998 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| || || || ||||| Sbjct 438640 ATACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCC 438699 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | || | || ||||| || || Sbjct 438700 GAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 438759 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || |||| || | |||||| |||| |||| Sbjct 438760 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCG 438819 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 438820 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATC 438870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003064399040