Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13 190 3e-43 seq10 131 2e-25 seq23 127 3e-24 >seq13 Length=613501 Score = 190 bits (210), Expect = 3e-43 Identities = 888/1390 (64%), Gaps = 25/1390 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | ||||| ||||| |||||||| ||| |||||||| || || || Sbjct 66205 TAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAA 66146 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||||||||||| | || ||| || ||||| | ||| || Sbjct 66145 GCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCC 66086 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAG 116081 ||||| | ||||||| || | | | | | | ||||||| ||| |||| || Sbjct 66085 TTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGC-CCCACATGTCATACTGAAG 66027 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 || ||||| || ||||| || | ||||||| || | ||| | ||| ||||| Sbjct 66026 TTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAA 65967 Query 116142 TTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 ||| | | |||| ||||| || |||||||| || ||||| || || | | |||| Sbjct 65966 CTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAAC 65908 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 ||||| ||| || || || || | || ||| |||| |||||||| | Sbjct 65907 GACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGACCCT 65848 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 116320 | ||||||| || || || || || | ||| || || ||||| || ||||| | Sbjct 65847 GAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGT 65788 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | | || | ||||| | | | || | || ||| || | || | || ||||| | Sbjct 65787 AGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCA 65728 Query 116381 GCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 | | | |||| | || | || | | || | | || |||||||| || Sbjct 65727 GACGCTTGAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAG 65669 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| || || |||| | |||||| ||| |||||| || ||||| || || | Sbjct 65668 GCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGG 65609 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || | ||| ||||| || | |||||| || || ||||| |||| || |||||| Sbjct 65608 TTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTG 65549 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 ||||| || | || | || ||||| || || |||| ||| || || | ||| | | || Sbjct 65548 TAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTC 65489 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 | | || | || || || || ||||| ||||||| |||||| ||| Sbjct 65488 TGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTC 65430 Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 |||||| ||| || ||| || | || || || || | || || | ||| |||| Sbjct 65429 AAACTCGTCA-CCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACC 65371 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | ||| || ||| |||| |||||||||||| || |||| ||| || || |||||| Sbjct 65370 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 65311 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 | || || ||| |||| || | || || || ||||| || | || || | || Sbjct 65310 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGA 65251 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAG 116911 ||||| |||||| || || | ||| | || | | || | |||| |||| Sbjct 65250 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTG---TTACCAC 65194 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT--C 116969 | |||| || || | || || ||| || || || ||||| || | |||||| | | Sbjct 65193 CTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGC 65134 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || || || || || ||| ||| | | | | | |||||||| | Sbjct 65133 TGA--CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAG 65076 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| ||||| || || ||| ||||| || || | |||| || |||||||||| Sbjct 65075 ACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCC 65016 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 |||||||||||| |||| | | || ||||| || ||| | || || || || Sbjct 65015 GTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGT 64956 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGT 117208 ||| ||||||||||| ||||| | || | || || ||| ||| ||||| | || Sbjct 64955 ACCGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGAGGTTGT 64897 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 | ||||| | || |||||| | ||||||||||||| | ||| ||||| | || Sbjct 64896 ACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCA 64837 Query 117269 TGTATTGGGG 117278 ||| ||||| Sbjct 64836 TGTGCTGGGG 64827 >seq10 Length=723576 Score = 131 bits (144), Expect = 2e-25 Identities = 260/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| || || | |||| |||||||||||| ||||| || Sbjct 312573 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 312632 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| | || | Sbjct 312633 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTGACGT 312691 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | | || | ||| || || || ||||| | |||| ||||| | |||| ||| | Sbjct 312692 CGAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 312751 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| || | | || || |||||||| | ||| || || || |||| Sbjct 312752 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 312811 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||| | |||||||| ||| | |||||||| || || || | ||| |||| Sbjct 312812 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 312871 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 176953 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 312872 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 312930 Query 176954 GCATCGTCCAACTTGGGAAT 176973 ||||| || | ||||||||| Sbjct 312931 GCATCTTCAAGCTTGGGAAT 312950 >seq23 Length=283388 Score = 127 bits (140), Expect = 3e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || |||||| ||||| Sbjct 279564 GCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCG 279505 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| |||| ||| ||||| ||||||||||| Sbjct 279504 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGATA 279445 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || || || || |||| |||||||| || |||| Sbjct 279444 CCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 279405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507015947840