Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq23 143 4e-29 >seq23 Length=283388 Score = 143 bits (158), Expect = 4e-29 Identities = 377/570 (66%), Gaps = 8/570 (1%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| ||||| ||| ||| || |||||||| |||||||||| ||||||||| Sbjct 279576 AAGAGGAGGCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 279517 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||||| || ||| |||||||| || || | ||||| | || Sbjct 279516 AAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCT 279457 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| || || ||||| ||||| || ||||| | |||| | || | ||| ||| Sbjct 279456 GAGAAGAAGATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTG 279397 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||| | | |||| | ||||||||| |||||||| || | || || |||| Sbjct 279396 CGGTCGTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCG 279337 Query 160154 ACGGCGTTAA--ACAATCT-GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGC 160210 ||||||| || | || || | |||||| | || ||| || | || || Sbjct 279336 ACGGCGTCAAAGAGAAACTCGCGCTGCTCGGGC---TCGCGGATGTAGGTGTCGATGAGG 279280 Query 160211 TTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTC 160270 |||||| |||| | ||| | || || || ||||| || |||||| || Sbjct 279279 AGCGAGTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGG 279220 Query 160271 GCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 || || ||| ||||| |||| | | | || || | || || | ||| Sbjct 279219 GCTTCGGCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCG 279160 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390 || | || || ||||| || | |||||||||||||| || | ||||| | |||||| Sbjct 279159 TCAGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGC 279100 Query 160391 CTCTTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGC 160449 | || ||||||| ||| | ||| | || | || | || || ||| |||| || Sbjct 279099 TTGTTGTCCCAGTCGTG-AAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGA 279041 Query 160450 AGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||||| || | |||||||| |||||| Sbjct 279040 AGCCTCGGCCTTCTTGTACATTTGCCAGAT 279011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154961453440