Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq11 152 1e-31 seq2 105 2e-17 seq5 96.9 8e-15 >seq11 Length=671998 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG-- 199466 ||||| | ||||| ||||| || || |||||||| |||| ||||||||| | |||| Sbjct 360149 CGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTC--CAAAAGGG 360092 Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 | | |||||||| |||||||| || || ||||||||||||||||| || || ||||| Sbjct 360091 TGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTC 360032 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 360031 CTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGA 359972 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||||||||| ||||| ||||| || || Sbjct 359971 GGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTG 359932 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || | |||||||||||| |||| ||||||||| | | || Sbjct 438421 CGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 438480 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||||||||||||||| || || ||| || Sbjct 438481 CGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCC 438540 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | || || || | Sbjct 438541 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGA 438600 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || || || || Sbjct 438601 GTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTG 438638 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || |||||||| || | |||||| || | | || | ||||| Sbjct 438658 AGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 438717 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||||||||||||||| || || ||| ||||| ||| Sbjct 438718 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 438777 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || || | ||||| ||| Sbjct 438778 TGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 438837 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 438838 TTGCCGGTGAGGGTCTTGACAAAGATCTG 438866 >seq2 Length=2105630 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| |||| | ||||||| | | || | || || Sbjct 253396 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCC 253455 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||||||||||||||| || || || || ||| Sbjct 253456 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 253515 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 253516 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 253575 Query 199598 TTACCCGT 199605 ||||| || Sbjct 253576 TTACCTGT 253583 >seq5 Length=755036 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || | || |||||| || | ||||||||| | | ||| Sbjct 175624 CGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTG 175683 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || || ||||| | ||||||||||| ||| ||| ||| Sbjct 175684 CGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCT 175743 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 175744 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 175803 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || ||||| || || || || || Sbjct 175804 GTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTG 175841 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || | || |||||| || | ||||||||| | | ||| Sbjct 175168 CGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTG 175227 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || || ||||| | ||||||||||| ||| ||| ||| Sbjct 175228 CGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCT 175287 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 175288 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 175347 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || || || ||||| || Sbjct 175348 GTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTG 175385 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || | || |||||| || | ||||||||| | | ||| Sbjct 175396 CGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTG 175455 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || || ||||| | ||||||||||| ||| ||| ||| Sbjct 175456 CGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCT 175515 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 175516 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 175575 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || || || ||||| || Sbjct 175576 GTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTG 175613 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| ||||| | || |||||| || | ||||||||| | | ||| | || || Sbjct 174948 CAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTC 175007 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || || ||||| || || ||||| | ||||||||||| ||| ||| ||||| || Sbjct 175008 CTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTC 175067 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| |||||| | | || || || | |||||||| Sbjct 175068 CTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGT 175127 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || || || ||||| || Sbjct 175128 CTTTCCTGTCAACGTCTTGACGAAAATCTG 175157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921237481608