Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq11 111 2e-19 seq2 100 3e-16 >seq5 Length=755036 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || ||||| | || ||||| || || ||||| || |||||||| || || ||||||||| Sbjct 174931 TTACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 174990 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || |||||||| |||| ||||| ||||| || || || ||||| ||||||||||| | Sbjct 174991 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175050 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | | ||||||||| |||||| ||||| | | | ||||| || || Sbjct 175051 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCG 175110 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || |||| ||| || || || || ||||| Sbjct 175111 ACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||||| || || ||||||||||| |||||||| |||| ||| Sbjct 175636 ACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 175695 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| ||||||||||| | || | | ||||||||| | Sbjct 175696 AGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGG 175755 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| || || || || | ||||| || || Sbjct 175756 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTA 175815 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 175816 CCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||||| || || ||||||||||| |||||||| |||| ||| Sbjct 175180 ACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 175239 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| ||||||||||| | || | | ||||||||| | Sbjct 175240 AGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGG 175299 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| || || || || | ||||| || || Sbjct 175300 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTT 175359 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||| || || || || ||||| Sbjct 175360 CCTGTCAACGTCTTGACGAAAATCTGCAT 175388 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||||| || || ||||||||||| |||||||| |||| ||| Sbjct 175408 ACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 175467 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| ||||||||||| | || | | ||||||||| | Sbjct 175468 AGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGG 175527 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | ||||| || || || || | ||||| || || Sbjct 175528 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTT 175587 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||| || || || || ||||| Sbjct 175588 CCTGTCAACGTCTTGACGAAAATCTGCAT 175616 >seq11 Length=671998 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 438433 ACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 438492 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | |||||||| || | || | | |||||||||| Sbjct 438493 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 438552 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | ||||| || || || || | |||||||| || Sbjct 438553 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTT 438611 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 438612 GCCGGTCAAAGTCTTGACGAAGATCTGCAT 438641 Score = 105 bits (116), Expect = 8e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || ||||||||||| || || || Sbjct 360120 CTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAA 360061 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| |||||| ||||| ||| Sbjct 360060 GATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 360002 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | ||||| || || ||||| || ||||||| Sbjct 360001 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAA 359942 Query 46581 CAAAGATTTGCATTTTG 46597 ||||||| ||||| ||| Sbjct 359941 CAAAGATCTGCATCTTG 359925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || || || || | || |||||||||||||| ||||| Sbjct 438678 CTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 438737 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||||||| |||||| ||||| | Sbjct 438738 GATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 438797 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || || | |||||||| ||||| || || || || || Sbjct 438798 GTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 438857 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 438858 AAAGATCTGCAT 438869 >seq2 Length=2105630 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||| || || ||||| |||| ||||||||||| || || || Sbjct 253416 CTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 253475 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||||||| |||||| ||||| ||| Sbjct 253476 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 253534 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | |||||| || ||||| || | |||||||| || || || Sbjct 253535 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 253583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238230428480