Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 298 5e-76 seq11 123 2e-23 seq5 87.8 2e-12 >seq23 Length=283388 Score = 298 bits (330), Expect = 5e-76 Identities = 401/554 (72%), Gaps = 13/554 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||| ||| || | |||||||| | || ||||| |||||| ||| || | Sbjct 279568 GCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 279509 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| ||||| || |||||||| || || | ||| || ||| || ||||| Sbjct 279508 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAA 279449 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || || |||||||| || || || || || ||||| |||| ||||| | ||| | | Sbjct 279448 GATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCT---TGCGGTC 279392 Query 133074 G---ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | ||||| || || |||||||||||||| | |||||| || || || |||| ||| Sbjct 279391 GTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGACGGC 279332 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAA 133188 || || | | | | | || | || ||| | |||||||||||||||| ||| Sbjct 279331 GTCAAAGAGAA--ACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAG 279274 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 || |||| ||||| | ||||||||| ||| || || ||||| ||||| || || ||| Sbjct 279273 TAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTCG 279214 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | |||| || || | ||| |||||||| || || ||||||||||| ||||| Sbjct 279213 GCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCAGAA 279154 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGC 133365 |||||||| ||||| || ||||| |||||| || |||||||||||||| | | Sbjct 279153 GCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTG 279094 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||||| | ||||||||| ||||| | |||||| ||||||| || || |||||| Sbjct 279093 TCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCG 279034 Query 133426 GCTTTTTTGTACAT 133439 || || |||||||| Sbjct 279033 GCCTTCTTGTACAT 279020 >seq11 Length=671998 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| |||||||| | || |||||| || | Sbjct 438641 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 438582 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| |||||| | || || Sbjct 438581 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 438523 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 438522 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 438463 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| ||||| | || || ||| Sbjct 438462 CATCCAGAAGGAGTCGACTTTGCATCTTGTCCTCCGT 438426 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| |||||||| || || |||||| |||| |||||| | Sbjct 359926 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCT 359985 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || ||||||||| | || Sbjct 359986 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 360044 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | || || || ||||| || || | |||||||| ||||| Sbjct 360045 TCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGACTA 360104 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 360105 CAACATCCAGAAGGA 360119 >seq5 Length=755036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || || ||||| |||| |||||| || | Sbjct 175388 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175329 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | ||||| Sbjct 175328 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175269 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || || || || |||| ||||| || |||||||||| Sbjct 175268 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175209 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| ||| || ||||| | || || ||| Sbjct 175208 ATTCAGAAGGAGAGC-ACCTTGCATCTCGTCCTCCGT 175173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || || ||||| |||| |||||| || | Sbjct 175616 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175557 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | ||||| Sbjct 175556 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175497 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || || || || |||| ||||| || |||||||||| Sbjct 175496 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175437 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| ||| || ||||| | || || ||| Sbjct 175436 ATTCAGAAGGAGAGC-ACCTTGCATCTCGTCCTCCGT 175401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||||| |||| |||||| || | Sbjct 175844 ATGCAGATCTTCGTCAAGACTCTGACCGGTAAGACGATCACTCTCGAAGTCGAGTCCTCG 175785 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | ||||| Sbjct 175784 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175725 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || || || || |||| ||||| || |||||||||| Sbjct 175724 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175665 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| ||| || ||||| | || || ||| Sbjct 175664 ATTCAGAAGGAGAGC-ACCTTGCATCTCGTCCTCCGT 175629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || || ||||| |||| |||||| || | Sbjct 175160 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175101 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | ||||| Sbjct 175100 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175041 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || || || || |||| ||||| || |||||||||| Sbjct 175040 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 174981 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| || |||| | || |||| ||| | || || Sbjct 174980 ATTCAGAAGGAGAGC-ACCTTGCACCTCGTCTTGCGCTTGCGTGGAGG 174934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172649948160