Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13 322 6e-83 seq23 145 9e-30 seq10 131 2e-25 seq3 86.0 8e-12 >seq13 Length=613501 Score = 322 bits (356), Expect = 6e-83 Identities = 921/1393 (66%), Gaps = 31/1393 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| ||||||| || || | || ||||| || | Sbjct 64827 CCCCAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCT 64886 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || || | || | ||||| ||||| Sbjct 64887 ATTGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTC-ATGCCTCGCCAACGCTCTT 64945 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || ||||||||| | | | ||||| || Sbjct 64946 CAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGA 65005 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| |||||| ||||| ||| || || Sbjct 65006 CTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 65065 Query 111851 TGGTATCGGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 ||||||||| | ||||||| || || | | | | ||| ||| ||||| | Sbjct 65066 TGGTATCGGTCTCAACATCCACTGCATTC-GTGGTACCGGCTCTTACATTGCCGGTACCA 65124 Query 111910 ATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 | ||| |||| | ||||| | || ||||| || || || ||| ||| || || || Sbjct 65125 ACGGTG--TCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTA 65182 Query 111968 TGTAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGT--CTATCT----TGAGCCATG 112021 || |||||| ||| | |||| | || || | |||||| |||||| || Sbjct 65183 CGTCGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTG 65239 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||| ||||| || | |||||||| || ||||| ||||| ||| | ||||| | || Sbjct 65240 GCACTCGGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCG 65299 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||| || ||||||| |||||| ||| | || ||||||||||||||||| || ||| | Sbjct 65300 TGCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCA 65359 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || |||| ||||||| ||| | || || || || ||||| || |||| | || Sbjct 65360 GAATGGCGATTGGTCGCTCATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTGCTACGG 65419 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGG 112260 ||| |||||||| |||||| ||||||| || | | | | ||| || | Sbjct 65420 TGACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGGAC-GCTGTAAGCGAACCG 65478 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | | || | || | | ||| | || || ||| ||||||| |||||||| |||| || Sbjct 65479 T-CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCT 65537 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | || || ||||| ||||| ||||| ||| || || ||||| | ||| ||| Sbjct 65538 TTCATCCTCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATC 65597 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||| | ||||||||||| || |||||| | || | | | | |||||| ||||| Sbjct 65598 AAGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTC 65657 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 || ||| | || || ||||| ||||||| | | || || | || ||| | ||| Sbjct 65658 TGCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTACGAT 65717 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | || || || || | ||| | || || ||| | |||| | || || Sbjct 65718 TTCAAGCGTCTGCATGAGGTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCATCGAC 65777 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || | ||||||||||| |||||| ||| || ||| | |||||||| || ||| Sbjct 65778 ATCAACTACTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCATCGGT 65837 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCG 112677 ||||||| || |||||||| |||| |||||| || | | | | || || || ||| Sbjct 65838 ATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGG--GTTATGCCTTCGAGTCCC 65895 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 || ||| | || | || || || ||||| || |||||||||||||| || | Sbjct 65896 CTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTATCACGCCGCTCTCGA-G 65954 Query 112738 CGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 112795 ||| || | |||||||| ||| | || | || || || | | ||||| || || Sbjct 65955 CGATCGTGC-GAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTCGCCCGC 66013 Query 112796 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACT 112854 ||| || || | ||||| | ||| ||||||| || | || | | || |||| Sbjct 66014 TTCCCAGGGAGAACTTCAGTATGACATGTGGG-GCGTCACTCCCTCCGACCTCTGGGACT 66072 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| | ||||||| || || | |||||||||||| || ||| |||||| Sbjct 66073 GGGCTTCGCTCAAGGCTAAGATTGCCAAGCACGGTCTTCGTAACTCACTCTTGTTGGCAC 66132 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| || || || ||| || |||||||| || || ||||| || ||||||| Sbjct 66133 CCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGCCCTACA 66192 Query 112975 CGACGAACATCTA 112987 | ||||||| || Sbjct 66193 CTTCGAACATTTA 66205 >seq23 Length=283388 Score = 145 bits (160), Expect = 9e-30 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| |||||||| ||| | || ||||| || || |||||||||||||| || |||| Sbjct 279405 CCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCT 279464 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | | | || | |||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 279465 TTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACG 279524 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||||||||||||||||| || ||| || ||||| Sbjct 279525 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGC 279564 >seq10 Length=723576 Score = 131 bits (144), Expect = 2e-25 Identities = 241/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| ||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| | Sbjct 312607 TTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCGGTCATGATCATGATA 312666 Query 176783 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 176841 | || || || ||||| | || || | || | ||| || || || ||||| | ||| Sbjct 312667 CTGCCGTATCGCAAGCT-GCTGACGTCGAGGTACTGCTTGCCGTGCTGCAGACCGATGAT 312725 Query 176842 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAAC 176901 || ||||| | |||| ||| || ||| ||| | || || ||||| || Sbjct 312726 CTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTCGCTTCACGGAC 312785 Query 176902 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAG 176961 ||| | ||| |||||||| ||||| |||||||| | || ||||| ||| | || Sbjct 312786 ATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCCACCTCGACAAG 312845 Query 176962 ACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTT 177018 ||| || || || |||| || || || ||||| || || | |||||| || || ||| Sbjct 312846 ACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGAGTGCAGTCCTT 312905 Query 177019 GCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 | | | |||| ||| || ||||| ||||| || | |||||||| Sbjct 312906 GGC-TTTCCTGCC--ACCAGCGTTGTTGGCATCTTCAAGCTTGGGAAT 312950 >seq3 Length=2001889 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/228 (69%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGACTTCAAAG 16121 ||||| |||||||||||||||| |||||| || || || | | ||| |||| Sbjct 349060 GCATCGATCTCATCAATGAAGATGATGCAAGGAGCGTGCTTCTTG---GCGTTGGCAAAC 349004 Query 16122 AGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | || || ||||| ||||| || ||||| || |||||||| ||||| | | | || Sbjct 349003 ATGTCTCGGACACGGCTTGGA-CCGACACCGACGAACATCTCTACAAACTCGGACCCAGA 348945 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 | | ||| || ||| || ||||| ||| | || ||| || | |||||||| Sbjct 348944 AACGGACAAGAATGGCACACCAGCCTCACCGGCAGTAGCCTTGGCTAGCAAGGTCTTACC 348885 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||| || ||| | ||| | |||||| || |||||||||||||| Sbjct 348884 GGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGAATCTTGGCGCC 348837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742213777280