Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq13 217 2e-51 seq23 96.9 4e-15 >seq13 Length=613501 Score = 217 bits (240), Expect = 2e-51 Identities = 903/1400 (65%), Gaps = 45/1400 (3%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||||| |||||||| || ||||| || || |||||||| || ||| || Sbjct 66205 TAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAA 66146 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG---ATGCGT 106051 || || ||||| ||||||| ||| || |||||||||||| | |||| || Sbjct 66145 GCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTG---CTTGGCAATCTTA 66089 Query 106052 TCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTG 106110 ||||||| | ||||||| || | | || | || ||||||| ||| | || Sbjct 66088 GCCTTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGC-CCCACATGTCATACTG 66030 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 ||| | || ||||| | ||| ||||| | ||||||| |||| || || | | ||| Sbjct 66029 AAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGC 65970 Query 106171 CAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 ||| || || | |||| || || | |||||||| ||||| || ||||| | | |||| Sbjct 65969 CAACTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCA 65911 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 || ||| || || || || || | | || ||| |||| ||||||| Sbjct 65910 AACGACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGAC 65851 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 106349 | |||||||| | ||| || || | ||| ||||| || || || || ||||||| Sbjct 65850 CCTGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGG 65791 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-AT--CTTTGT-GATT 106405 | || | || |||| |||| ||| | || ||| || || ||||| || Sbjct 65790 GGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTG----CAGATGGCTTTGGCGACC 65735 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 ||||| || | |||| | || | | || | | || |||||| Sbjct 65734 TCATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCG 65675 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || || ||||| ||||| ||||| |||||| | | |||||| | ||||| || Sbjct 65674 ATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTG 65615 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT-GCACGC 106584 || | |||||| | ||| || || || | ||||| ||||| ||| ||| ||| || Sbjct 65614 CAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GC 65556 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||||||||| ||| | || | || ||||| ||||| |||| ||| || || | ||| Sbjct 65555 GTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCA 65496 Query 106645 CA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 106703 | | || | | || | || | || |||||||| |||||||| ||||| Sbjct 65495 GAGCTTCTGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGA 65437 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 | |||||||| ||||| ||||| || || || || || || || | | Sbjct 65436 GACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGA 65377 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823 | ||||| | ||| || ||| |||| ||||||||| || || || | ||| || | Sbjct 65376 GCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGT 65317 Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883 | ||||| || | ||| | || || | ||| ||||| || || || ||||||| Sbjct 65316 AGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACT 65257 Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC---- 106939 | | || ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 65256 CGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGT 65200 Query 106940 --CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 ||| |||| | || || || || ||| ||| || || || ||||| || | |||| Sbjct 65199 TACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATAC 65140 Query 106998 CAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC--AT-CA-T 107051 | | |||| ||| || || || ||| || | | | ||| || || | Sbjct 65139 CGTTGCTGA--CACCGTTGGTACCGGCAATGTAAG----AGCCGGTACCACGAATGCAGT 65086 Query 107052 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 107111 |||||| | || ||||| || || ||| ||||| ||||| | | || || Sbjct 65085 GGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGT 65026 Query 107112 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 107171 | ||||| |||| ||| ||||| ||||| ||| || |||||| || || | ||| | Sbjct 65025 CGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAG 64966 Query 107172 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGAC 107230 | || ||||| || |||||||| ||||| | || ||| | || ||| ||| ||| Sbjct 64965 GGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGT-AAAGTACTTTTGCGAC 64907 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 || || ||| ||||| | || |||||||| | ||||| || |||| || ||| Sbjct 64906 ATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACA 64847 Query 107291 CGCATAAACATGTATTGGGG 107310 ||||| | ||||| ||||| Sbjct 64846 CGCATGATCATGTGCTGGGG 64827 >seq23 Length=283388 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| || || || || || || || |||||| || || Sbjct 279565 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 279506 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 279505 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 279446 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||| || || ||||| |||| || ||||| ||||||| Sbjct 279445 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 279405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980623005760