Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 8e-15 seq5 89.7 3e-13 >seq11 Length=671998 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||| ||||| | || |||| || ||||| || || ||||| Sbjct 360119 TCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAG 360060 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| |||||| Sbjct 360059 ATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGT-- 360002 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || |||| ||| || || || |||||||| || || Sbjct 360001 --TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTT 359944 Query 34967 CACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 359943 AACAAAGATCTGCATCTT 359926 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| || ||||| || || ||||| Sbjct 438451 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAG 438510 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||| |||||| Sbjct 438511 ATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 438570 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||| || || | || ||||| || || || | |||||| || Sbjct 438571 TCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACG 438630 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 438631 AAGATCTGCATA 438642 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || ||||| ||| | || |||| || ||||| || || || || Sbjct 438679 TCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAG 438738 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| ||||| || Sbjct 438739 ATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--AT 438796 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | ||| || |||| ||| ||||| || || ||||| ||||| Sbjct 438797 --TGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 438854 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 438855 GACAAAGATCTGCAT 438869 >seq5 Length=755036 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || ||||| | ||| | ||| || | ||| | ||||| || ||||||||||| ||||| Sbjct 174931 TTACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 174990 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 ||||| | || | || || || || || || ||||| || | ||| |||||||| | Sbjct 174991 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175050 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGC 34927 || | || |||||||| ||||| ||||| || | ||||| || || Sbjct 175051 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAGGA 175106 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || |||| || || || ||||| || | ||||| || || ||||||||| Sbjct 175107 CTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCATA 175161 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| ||||| ||||| | || | || || || || || || Sbjct 175648 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCA 175707 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | ||| |||||||| | || | || |||||||| ||||| ||| Sbjct 175708 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 175767 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || || ||| || |||| || || || || || || || Sbjct 175768 AC--AT--TGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAG 175823 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 |||||| || |||||||||||| Sbjct 175824 AGTCTTGACGAAGATCTGCATA 175845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633505044672