Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-11 >seq5 Length=755036 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || ||||| | ||| || || || ||| ||||| || | ||||| | Sbjct 175627 AGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGG 175686 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || ||||| || || ||||| || | || ||||| ||||||||||| ||||| Sbjct 175687 CCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCC 175746 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || || || || || || || || || | | || | | ||||||||| Sbjct 175747 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAG-GACTCGACTTCGAGAGT 175805 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || ||||| || ||||| || ||||| || |||||| Sbjct 175806 GATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCATA 175845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294730771760