Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13 304 2e-77 seq23 196 9e-45 >seq13 Length=613501 Score = 304 bits (336), Expect = 2e-77 Identities = 1025/1574 (65%), Gaps = 53/1574 (3%) Strand=Plus/Minus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| ||||| | || || | | ||||| ||| ||||||||| Sbjct 66247 GGGTTGACGACCTGGAATTCACCAGCAAGTACACGACGAGAGTAAATGTTCGAAGTGTAG 66188 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||| |||| ||||| || || ||||||||||| ||| Sbjct 66187 GGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCC 66128 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 | || ||| ||| | | ||||||| | | || | ||| ||||||||| Sbjct 66127 AACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGAGCGAAGCCCAGTCC 66068 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || ||||| | | ||| |||||||||| |||| ||| | | || Sbjct 66067 CAG---------AGGTCGGAGGGAGTGACGCCCCACATGTCATACTG-AAGTTCTCCCTG 66018 Query 213147 CTCACGGGGCTGCCCT-GGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | |||| ||| |||| | ||||| ||| ||||||| |||| |||||| || Sbjct 66017 GGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACGA 65958 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || || |||| |||||||| || || |||| | ||| | ||||| Sbjct 65957 TCGCTCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTC 65898 Query 213266 TGGGGACGTGAAGGGCATCATC-ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 |||||| ||||| ||| | | ||| ||| |||| || || ||||| || |||| Sbjct 65897 AGGGGACTCGAAGG-CATAACCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGA 65839 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAA-GGGGTAAAAGTTG 213383 | |||||||| | ||| | || ||| || | | | || || ||| |||||| ||||| Sbjct 65838 TACCGATGGGACGGTGACGCATGTTGGA-TCGACGAGCTTCTTCAACGGGGTAGTAGTTG 65780 Query 213384 CAGTCGATGATCTTGTTGAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||||||||||||||| | ||| || | |||| ||||| ||| | ||| | Sbjct 65779 ATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGC---TTTGGCGACCTCATGCAGACGC 65723 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | | || | | || | | | | | || || ||||||||| ||||| | Sbjct 65722 TTGAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCCAAG 65663 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||| || || ||||| | | | | | |||||| ||||| |||||||| |||||| | Sbjct 65662 TTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAG 65603 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 || |||||| || ||||||| ||||| ||||| ||| |||| ||||||||||| Sbjct 65602 CACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGTAGAGG 65543 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| | || |||||||| ||| ||| | || || | |||||| | | |||| Sbjct 65542 ATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTGGGCC 65483 Query 213681 TTGACCACCCGCCTGACAGC-TCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 ||||| ||| | ||||| ||| | ||||||||| | |||||||| | || Sbjct 65482 TTGACGGTTCGCTT-ACAGCGTCC---CTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAA 65427 Query 213740 TTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTC 213799 |||| || || | | || || || || || |||||||| ||| || Sbjct 65426 CTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGCGACCAATC 65367 Query 213800 CCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 || | | ||| ||| |||| |||||| || || |||||||| || ||| ||| || | Sbjct 65366 GCCATTCTGCTC-GACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCT 65308 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | || | || ||| || ||| ||||||| || || || || |||| | Sbjct 65307 CACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACAT 65248 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGT 213975 ||| |||||| ||||| |||||||| |||||||| || || | |||| || || |||| Sbjct 65247 CCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGT 65188 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTC 214035 | || | || ||||||||| || || | ||| || | |||||| ||| | Sbjct 65187 CGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTG--CTGAC 65130 Query 214036 --CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTAT 214093 ||||||| || || || || ||||||| | | | | | ||| ||| || || Sbjct 65129 ACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCGAT 65070 Query 214094 GCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCAT 214153 ||||||||| ||||||||||||||| ||| | | | || || ||| ||| | || Sbjct 65069 ACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGAT 65010 Query 214154 GCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGA 214213 |||||| | | | | | | ||| || ||||||||| || || | || | Sbjct 65009 CGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGC 64950 Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 |||||| ||||| || |||||| | | |||| | || | ||| |||| ||||| Sbjct 64949 GTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTC 64890 Query 214274 --CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGC 214331 || ||| ||||| || ||| || | |||| | ||| | ||||||| Sbjct 64889 AATAGCACT--CTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCATGATCATGTGC 64832 Query 214332 TGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGA 214385 ||||| | ||| | | |||| ||| || ||||| |||||| ||||| || Sbjct 64831 TGGGGACGCTC--AGCGACCTT----GCCGTTGATACGGAGCAAGTAGGATCGCTCGAGG 64778 Query 214386 GTCTTGAACCCAAAGTAGGAGTAG-GTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAG 214444 |||||||| || ||| || |||| | | | ||| | ||| |||| ||| | ||| || Sbjct 64777 GTCTTGAAACCGAAGAAGTTGTAGTGGAAG-TCGCGCTCGTAGATGATGGCCGAGTCGAG 64719 Query 214445 CTCTTCCGCGTGCT 214458 || ||| ||||| Sbjct 64718 CTGGTCCTTGTGCT 64705 >seq23 Length=283388 Score = 196 bits (216), Expect = 9e-45 Identities = 380/559 (68%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||| || |||| | || ||||| || ||||||| ||||||||| Sbjct 279575 AGAGGAGGCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGA 279516 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || |||||| ||||||| || | || ||||||||||| || | || || ||||| | Sbjct 279515 AGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTG 279456 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| || || || || || || || ||| | ||| |||| | || || Sbjct 279455 AGAAGAAGATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGC 279396 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||| ||| ||||| || ||||||||||||| | || || ||||| | Sbjct 279395 GGTCGTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATAGTCTCGA 279336 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 ||| ||||| || || || | | || | ||||| |||| ||| Sbjct 279335 CGGCGTCAAAGAGAAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGC- 279277 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| | || ||||| | ||||| || ||||||||| ||||||||| | || Sbjct 279276 --GAGTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGG 279219 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 | || |||| || || | ||| | ||| | || ||||| ||||| || || | Sbjct 279218 CTTCGGCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGT 279159 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | ||||| || |||||||||||||| || | ||| || |||||||||| | |||| Sbjct 279158 CAGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCT 279099 Query 48600 CATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || |||| | || | ||| ||| ||||| | ||| || | ||||||||||| | Sbjct 279098 TGTTGTCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAG 279039 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 279038 CCTCGGCCTTCTTGTACAT 279020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532520540160