Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14 134 9e-26 seq5 102 5e-16 seq11 100 2e-15 >seq14 Length=672989 Score = 134 bits (148), Expect = 9e-26 Identities = 364/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || ||||| |||| Sbjct 433995 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTTGCCGTCTGGCAGAATGACCGT 434054 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || ||||| || | || || Sbjct 434055 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATACGTCGCCTTCACC 434114 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | |||| ||| || |||||||| || || | || | || || || || Sbjct 434115 GACTCGGAACGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCCCACAAC 434174 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | | ||||| || || ||||| ||| || || || ||| Sbjct 434175 ACCGTCTTCGATGCCAAGCGTCTTATTGGCCGCAAGTTTGACGATGCCGAGGTTCAGTCT 434234 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA-GAAGC 474627 || ||| || |||||||| |||| | || || || || || | || | | | Sbjct 434235 GACATGAAGCACTGGCCTTTCGAGGTTGTCAACACCGGCGGCAAGCCCCAGATCCGCATC 434294 Query 474628 AA-TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| || | || || |||||| | Sbjct 434295 GAGTACAAG--GGTGAGAAGAAGGTCTTCACTCCCGAAGAAGTCTCCTCCATGGTTCTCC 434352 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | ||||| ||| | || || || | || | ||||| || | Sbjct 434353 TCAAGATGCGTGAGACCGCCGAGGCC-TACCTCGGTGGAACCGTCAAGGATGCCGTCGTC 434411 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || || ||||| ||||| || || || ||||| || | ||| Sbjct 434412 ACTGTCCCCGCTTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATT 434471 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | |||||||||||||| || || || ||||| | ||||| ||| Sbjct 434472 TCGGGTCTCAACGTTATGCGTATTATTAATGAGCCTACTGCTGCCGCCATCGCTTACGGT 434531 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 434532 CTCGACAAGAA 434542 >seq5 Length=755036 Score = 102 bits (112), Expect = 5e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| | || || || || || || || || | ||||| Sbjct 175623 ACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGT 175682 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || |||||||| |||||||| || | || || || ||||||||||| || Sbjct 175683 GCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACC 175742 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| || || || || | | ||| || Sbjct 175743 TTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAG 175802 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| |||||||| ||||| || || Sbjct 175803 AGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTG 175841 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| | || || || || || || || || | ||||| Sbjct 175167 ACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGT 175226 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || |||||||| |||||||| || | || || || ||||||||||| || Sbjct 175227 GCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACC 175286 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| || || || || | | ||| || Sbjct 175287 TTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAG 175346 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || | ||||| |||||||| || Sbjct 175347 AGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTG 175385 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| | || || || || || || || || | ||||| Sbjct 175395 ACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGT 175454 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || |||||||| |||||||| || | || || || ||||||||||| || Sbjct 175455 GCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACC 175514 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| || || || || | | ||| || Sbjct 175515 TTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAG 175574 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || | ||||| |||||||| || Sbjct 175575 AGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTG 175613 >seq11 Length=671998 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| |||||||| |||| || || || | || || || | || Sbjct 438420 ACGAAGACGGAGGACAAGATGCAAAGTCGAC--TCCTTCTGGATGTTGTAGTCGGAGAGG 438477 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||| ||||| |||||||| || ||||| || |||||||| ||||| Sbjct 438478 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATA 438537 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || |||||||| |||||||| ||||| || || || |||| | ||| Sbjct 438538 CCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCA 438597 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| | |||||| ||||| || || Sbjct 438598 AGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTG 438638 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| || || || || || ||||| | || || Sbjct 438648 ACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGT 438707 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 438708 ACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 438767 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| ||||| || || | | || || Sbjct 438768 TTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAG 438827 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| || || || || Sbjct 438828 GGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTG 438866 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || ||||| || |||||||| |||||||||||||| Sbjct 360084 ATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTT 360025 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||||| || || || || | | | | || ||||| | Sbjct 360024 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA-CCTCGAGGGTGA 359966 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| || ||||| || || || Sbjct 359965 TCGTCTTACCCGTGAGGGTTTTAACAAAGATCTG 359932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178170523552