Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 1e-11 >seq5 Length=755036 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | ||| || || ||| || || || || || Sbjct 175159 ATACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 175218 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | ||| |||||||||||||| |||| ||| || ||||| Sbjct 175219 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175278 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || || || || Sbjct 175279 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCG 175338 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || || || || || || || | || |||||||| Sbjct 175339 ACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175388 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | ||| || || ||| || || || || || Sbjct 175387 ATACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 175446 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | ||| |||||||||||||| |||| ||| || ||||| Sbjct 175447 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175506 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || || || || Sbjct 175507 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCG 175566 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || || || || || || || | || |||||||| Sbjct 175567 ACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175616 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | ||| || || ||| || || || || || Sbjct 175615 ATACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 175674 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | ||| |||||||||||||| |||| ||| || ||||| Sbjct 175675 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175734 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || || || || Sbjct 175735 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCG 175794 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || ||||| || | || || | || |||||||| Sbjct 175795 ACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479697272400