Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13 161 1e-33 seq23 143 3e-28 seq1 104 3e-16 seq14 87.8 2e-11 >seq13 Length=613501 Score = 161 bits (178), Expect = 1e-33 Identities = 191/259 (74%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| || || |||| ||| ||||| |||||||||||||||| |||||| Sbjct 65191 TGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 65132 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||| || || | ||| | ||||| | || | ||| | | ||| Sbjct 65131 ACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGATGTTGAGACCG 65072 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| ||||||||||| || ||| Sbjct 65071 ATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCG 65012 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| |||||||| || || || ||||||||| || ||||| | || ||| Sbjct 65011 ATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCG 64952 Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324 |||||||||||||| |||| Sbjct 64951 GCGTTGAAGAGCGTTGGCG 64933 >seq23 Length=283388 Score = 143 bits (158), Expect = 3e-28 Identities = 208/289 (72%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| ||| ||||||||||| |||||||| Sbjct 279547 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTT 279488 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | || ||| ||||| ||||| || |||||||||||||| Sbjct 279487 CTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGATACCTTCGACGGCGGCAAA 279428 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | ||| ||||| || |||||| | || || ||||||||| | ||||| Sbjct 279427 GGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTC---GTTGATCCATCGAAGGGCCCA 279371 Query 869359 GTCGGCCTTTTTCCTCACCGAC-GGCACCGTGTCGATGGCGCGAAAGAG---GTGGTCCT 869414 |||||||| ||| | | |||| || | || |||| |||| |||||| | | || Sbjct 279370 TTCGGCCTTCTTCTTGA-CGACGGGGATAGTCTCGACGGCGTCAAAGAGAAACTCGCGCT 279312 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || || || ||||||||||| |||||||| ||||| || Sbjct 279311 GCTCG---GGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTTTC 279266 Score = 127 bits (140), Expect = 2e-23 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | | || || | ||| Sbjct 279264 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCTTCGGCGGCCTGG 279205 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| ||||| ||||| |||||||| Sbjct 279204 ACCTCGGAACTGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCAGAAGCGGCGAAG 279145 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 || || |||||||| ||| ||||| ||||||| |||| ||||| |||||| | Sbjct 279144 AAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCG 279085 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | |||||| | |||||||||||||||| || ||||||||||| ||| Sbjct 279084 TGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTG 279025 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 279024 TACATTTGCCA 279014 >seq1 Length=1921480 Score = 104 bits (114), Expect = 3e-16 Identities = 274/413 (66%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAAC-GAGCA 1573834 || || ||| | ||||||||||| || || ||||||||| | || || ||| ||| | Sbjct 306451 CTACCATGGGTAGAAAAGTATCGACCGTTGCGGCTCGACGATGTGGTTGGTAACAGAG-A 306393 Query 1573835 CGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCA-ACCTCTTGCTGG 1573893 | || ||| ||| | || | | ||||||| || || ||| |||| | | Sbjct 306392 CACCATCGATCGTCTGAAAGTGATTCAGAACGACGGCAAC-TGTCCACACCTTCTCATCT 306334 Query 1573894 CGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGG 1573953 |||| ||| |||| || |||||||| || ||||| ||||||| || | | Sbjct 306333 CGGGATTGCCGGGCATCGGAAAGACCACTTCAGTCCTCTGTCTCGCGCGTGCACTTCTCG 306274 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 ||| ||| | | || | ||||| ||||||||||| || || || || || || || Sbjct 306273 GCGATGCCTACAAAGAAGGTGTGCTTGAACTCAACGCTTCCGATGAACGAGGTGTGGATA 306214 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCC 1574073 |||| || || | |||||| || ||| |||| || || ||||| || | | Sbjct 306213 TCGTCCGAAACAAGATCAAGAACTTTGCCCAGAAGAAAGTCTCGCTCCCGCCAGGCAGGC 306154 Query 1574074 ACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGC 1574133 ||||| | ||||||||||||| ||||| | | || | || || ||||| || ||| Sbjct 306153 ACAAGATCGTCATCCTCGACGAAGCCGATAGTATGACACCAGCAGCACAGCAAGCTTTGC 306094 Query 1574134 GGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 | ||||||||| | || ||||||| || || || | | || |||||| Sbjct 306093 GTCGCACCATGGAGATATACTCCAACACAACACGTTTCTGCTTTGCTTGCAAC 306041 >seq14 Length=672989 Score = 87.8 bits (96), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 ||||||| |||||| ||||||||||||| || ||||| |||||||||||| ||| Sbjct 656017 TCAACCTCAGTGTCACGCCTCCCTACAACGCCGATTTCGACGGTGACGAGATGAACTTGC 656076 Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACA--CCATGAGCGTGTCGCT 507831 |||| || ||| ||| | | || |||||| | |||| | ||| | || | | Sbjct 656077 ACGTTCCGCAGAGCGAAGAGACTCGTGCCGAGCTCTCGCAGATTGCAT--GGGTTCCTCG 656134 Query 507832 CAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 ||| |||||||| ||||||||||||||| |||| || Sbjct 656135 ACAGATTGTGTCGCCTCAGGCCAACAAGCCCGTCATGGG 656173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137230447608