Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 seq5 104 2e-17 >seq11 Length=671998 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| ||||||| || || ||||| || || || ||||| || || | | Sbjct 359928 GATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCTTC 359987 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| |||||||| || || ||||| Sbjct 359988 GGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCA 360047 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || ||||| || ||| | | | | | || || || Sbjct 360048 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGACTACAA 360107 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 360108 CATCCAGAAGGAGTCTACCCTTCAC 360132 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 438870 GATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTC 438811 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 438810 GGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 438751 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| |||||| | | | | || ||||| || Sbjct 438750 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAA 438691 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 |||||| ||||| || || || || Sbjct 438690 CATTCAGAAGGAGTCCACCCTTCA 438667 >seq5 Length=755036 Score = 104 bits (114), Expect = 2e-17 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || || || || || |||||||| || || | Sbjct 175160 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175101 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 175100 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175041 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || || || ||||| | | | || || || ||| Sbjct 175040 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 174981 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||||| ||||| || | ||| | || ||||| ||||| |||| | ||||||||| Sbjct 174980 ATTCAGAAGGAGAGCACCTTGCACCTCGTCTTGCGCTTGCGTGGAG--GTAACTGAGCC 174924 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || || || |||||||| || || | Sbjct 175844 ATGCAGATCTTCGTCAAGACTCTGACCGGTAAGACGATCACTCTCGAAGTCGAGTCCTCG 175785 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 175784 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175725 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || || || ||||| | | | || || || ||| Sbjct 175724 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175665 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 175664 ATTCAGAAGGA 175654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || || || || || |||||||| || || | Sbjct 175388 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175329 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 175328 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175269 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || || || ||||| | | | || || || ||| Sbjct 175268 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175209 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 175208 ATTCAGAAGGA 175198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || || || || || |||||||| || || | Sbjct 175616 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 175557 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 175556 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 175497 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || || || ||||| | | | || || || ||| Sbjct 175496 CAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 175437 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 175436 ATTCAGAAGGA 175426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897465030720