Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq11 122 6e-23 seq2 96.9 2e-15 >seq5 Length=755036 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || ||||| | ||| | || ||| ||||| | ||||||||||||||||||||| ||||| Sbjct 174931 TTACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 174990 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || || |||| | || || |||||||| || || ||||||| ||| |||||||| | Sbjct 174991 GAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGA 175050 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGC 34923 || | || |||||||| | || || ||||| || | ||||| || || Sbjct 175051 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAGGA 175106 Query 34924 CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || | || || |||||||| || | ||||| || || |||||||| Sbjct 175107 CTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175160 Score = 118 bits (130), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||||||||||||||||||||| ||||| || || |||| | || Sbjct 175633 AGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 175692 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||||| ||| |||||||| | || | || |||||||| Sbjct 175693 TCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 175752 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| || | || || Sbjct 175753 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGAT 175808 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| || ||||||||||| Sbjct 175809 CGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 175844 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||||||||||||||||||||| ||||| || || |||| | || Sbjct 175177 AGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 175236 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||||| ||| |||||||| | || | || |||||||| Sbjct 175237 TCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 175296 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| || | || || Sbjct 175297 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGAT 175352 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || | ||||| || || |||||||| Sbjct 175353 CGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175388 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||||||||||||||||||||| ||||| || || |||| | || Sbjct 175405 AGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 175464 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||||| ||| |||||||| | || | || |||||||| Sbjct 175465 TCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 175524 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| || | || || Sbjct 175525 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGAT 175580 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || | ||||| || || |||||||| Sbjct 175581 CGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 175616 >seq11 Length=671998 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| |||||| | ||| |||| |||| Sbjct 360140 AGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAAAAGGGTGCGACCATCT 360081 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||| || | || | || |||||||| Sbjct 360080 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 360021 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| || | ||| || ||| Sbjct 360020 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTC 359961 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || |||||||||||||| Sbjct 359960 TTACCCGTGAGGGTTTTAACAAAGATCTGCAT 359929 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| |||| ||||||||||||||| || ||||| ||| | || |||| Sbjct 438658 AGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 438717 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || ||||| || | || | || |||||||| Sbjct 438718 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 438777 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | |||||| || | ||| |||||| Sbjct 438778 TGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 438837 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| |||||||||||||| Sbjct 438838 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 438869 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| || || || Sbjct 438450 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 438509 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || || |||||| Sbjct 438510 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 438569 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| || |||||| |||| || |||||||| || || | ||||| || Sbjct 438570 GTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGAC 438629 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 438630 GAAGATCTGCAT 438641 >seq2 Length=2105630 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| ||| | |||||||| ||| |||| | || Sbjct 253396 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGAGAGGGTGCGGCCGTCC 253455 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 253456 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 253515 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| |||||| Sbjct 253516 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 253575 Query 34946 TTTCCCGT 34953 || || || Sbjct 253576 TTACCTGT 253583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692704734856